Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACI3L8_RS01430 Genome accession   NZ_CP173391
Coordinates   336689..338044 (-) Length   451 a.a.
NCBI ID   WP_038889531.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 331689..343044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L8_RS01405 (ACI3L8_01405) bioA 332099..333376 (+) 1278 WP_404971789.1 adenosylmethionine--8-amino-7-oxononanoate transaminase -
  ACI3L8_RS01410 (ACI3L8_01410) - 333514..333780 (-) 267 WP_012127608.1 DksA/TraR family C4-type zinc finger protein -
  ACI3L8_RS01415 (ACI3L8_01415) - 333917..334357 (-) 441 WP_404971790.1 hypothetical protein -
  ACI3L8_RS01420 (ACI3L8_01420) - 334351..335016 (-) 666 WP_233902773.1 ATPase -
  ACI3L8_RS01425 (ACI3L8_01425) serS 335289..336596 (-) 1308 WP_045397971.1 serine--tRNA ligase -
  ACI3L8_RS01430 (ACI3L8_01430) rarA 336689..338044 (-) 1356 WP_038889531.1 replication-associated recombination protein A Machinery gene
  ACI3L8_RS01435 (ACI3L8_01435) lolA 338045..338671 (-) 627 WP_005431005.1 outer membrane lipoprotein chaperone LolA -
  ACI3L8_RS01440 (ACI3L8_01440) - 338733..342056 (-) 3324 WP_404971791.1 DNA translocase FtsK 4TM domain-containing protein -
  ACI3L8_RS01445 (ACI3L8_01445) lrp 342209..342703 (-) 495 WP_005528862.1 leucine-responsive transcriptional regulator Lrp -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 50002.42 Da        Isoelectric Point: 5.5038

>NTDB_id=958632 ACI3L8_RS01430 WP_038889531.1 336689..338044(-) (rarA) [Vibrio campbellii strain LB3]
MVVSNYTLDFSGDEDFRPLAARMRPETIEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAE
VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRA
RVYKLTSLDKDEISLALNQAISDKERGLGNTPAHFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLL
AEVAGEKVSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSA
WDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPG
AYAAGEQYLPPEMGDRRYYQPTNRGLETKIGEKLDYLATLDANSPQKRYEK

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=958632 ACI3L8_RS01430 WP_038889531.1 336689..338044(-) (rarA) [Vibrio campbellii strain LB3]
TTGGTAGTGAGCAATTACACATTAGATTTCTCGGGGGACGAAGATTTTCGTCCCCTTGCTGCTCGTATGAGACCGGAAAC
GATCGAACAATACATCGGACAGCAGCACATTTTAGGTCCTGGCAAGCCTTTACGTCGCGCGTTAGAGGCGGGTCATATTC
ACTCGATGATCTTGTGGGGACCTCCAGGCACTGGCAAAACGACATTAGCGGAAGTGGCTGCAAACTATGCTAACGCAGAA
GTTGAGCGTGTGTCTGCGGTGACGTCTGGCGTGAAAGAAATCCGTGCTGCAATCGAGAAAGCGCGTGAGAACAAAATGGC
GGGTCGCCGCACCATCTTATTTGTGGACGAGGTGCATCGCTTCAACAAGTCTCAACAAGACGCGTTTTTACCGCATATCG
AAGATGGCACCGTTACCTTTATTGGTGCGACGACAGAAAACCCATCGTTTGAGTTAAATAACGCATTGCTGTCACGTGCG
CGTGTGTACAAGTTAACGTCTCTCGATAAAGACGAAATCTCACTGGCGCTGAATCAAGCGATCAGTGACAAAGAGCGTGG
GTTGGGAAATACGCCTGCACACTTCGCTGATAACGTATTAGATCGCTTAGCAGAACTGGTAAACGGTGATGCGCGCATGT
CTCTCAACTACCTTGAGCTGCTATACGACATGGCAGAAGACAATGCACAAGGTGAAAAAGAGATCACACTTAAGTTGCTT
GCGGAAGTAGCAGGGGAGAAAGTCTCTCGCTTCGATAACAAAGGCGACATTTGGTACGACTTAATCTCTGCTGTACACAA
GTCGATTCGTGGCTCTAACCCTGATGCCGCGCTTTACTGGGCTGCACGTATGATCGCAGCAGGTTGCGACCCTTTGTACA
TTGCTCGCCGCCTACTGGCGATTGCCTCTGAAGACGTGGGCAATGCGGACCCTCGCGCAATGCAAGTGGCACTTTCCGCG
TGGGATTGCTTTACACGTGTTGGTCCCGCAGAAGGTGAACGTGCGATTGCACAGGCGATCGTGTACTTAGCGTGTGCGCC
AAAAAGTAATGCGGTATACGTGGCGTGGAAACAAGCGCTCACGGACGCTCATAACTTACCTGAATATGAAGTGCCGCATC
ACCTTCGAAATGCACCGACCAGTTTGATGAAAGACATGGGTTATGGTGCAGAGTATCGTTACGCGCACGATGAGCCTGGC
GCTTACGCCGCAGGTGAGCAATATTTGCCGCCTGAAATGGGCGATCGTAGGTACTATCAGCCGACAAATCGTGGTCTAGA
GACCAAAATCGGCGAAAAGTTAGATTACTTGGCTACTTTAGACGCAAATAGCCCACAAAAGCGCTATGAAAAGTAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(191-270)

ATPase family associated with various cellular activities (AAA) (AAA)

(56-161)

MgsA AAA+ ATPase C terminal (MgsA_C)

(271-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.48

93.792

0.37