Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACI3L7_RS09615 Genome accession   NZ_CP173387
Coordinates   2067118..2068473 (+) Length   451 a.a.
NCBI ID   WP_038889531.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB135     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2062118..2073473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L7_RS09600 (ACI3L7_09600) lrp 2062462..2062956 (+) 495 WP_005528862.1 leucine-responsive transcriptional regulator Lrp -
  ACI3L7_RS09605 (ACI3L7_09605) - 2063109..2066429 (+) 3321 WP_404969570.1 DNA translocase FtsK 4TM domain-containing protein -
  ACI3L7_RS09610 (ACI3L7_09610) lolA 2066491..2067117 (+) 627 WP_404969571.1 outer membrane lipoprotein chaperone LolA -
  ACI3L7_RS09615 (ACI3L7_09615) rarA 2067118..2068473 (+) 1356 WP_038889531.1 replication-associated recombination protein A Machinery gene
  ACI3L7_RS09620 (ACI3L7_09620) serS 2068566..2069873 (+) 1308 WP_045378081.1 serine--tRNA ligase -
  ACI3L7_RS09625 (ACI3L7_09625) - 2070080..2070811 (+) 732 WP_404969572.1 ATPase -
  ACI3L7_RS09630 (ACI3L7_09630) - 2070805..2071245 (+) 441 WP_404969573.1 hypothetical protein -
  ACI3L7_RS09635 (ACI3L7_09635) - 2071382..2071648 (+) 267 WP_012127608.1 DksA/TraR family C4-type zinc finger protein -
  ACI3L7_RS09640 (ACI3L7_09640) bioA 2071788..2073065 (-) 1278 WP_404969574.1 adenosylmethionine--8-amino-7-oxononanoate transaminase -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 50002.42 Da        Isoelectric Point: 5.5038

>NTDB_id=958522 ACI3L7_RS09615 WP_038889531.1 2067118..2068473(+) (rarA) [Vibrio campbellii strain LB135]
MVVSNYTLDFSGDEDFRPLAARMRPETIEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAE
VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRA
RVYKLTSLDKDEISLALNQAISDKERGLGNTPAHFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLL
AEVAGEKVSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSA
WDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPG
AYAAGEQYLPPEMGDRRYYQPTNRGLETKIGEKLDYLATLDANSPQKRYEK

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=958522 ACI3L7_RS09615 WP_038889531.1 2067118..2068473(+) (rarA) [Vibrio campbellii strain LB135]
TTGGTAGTGAGCAATTACACATTAGATTTCTCGGGGGACGAAGATTTTCGTCCCCTTGCTGCTCGTATGAGACCGGAAAC
GATCGAACAGTACATCGGTCAGCAGCACATTTTAGGTCCTGGTAAGCCACTACGCCGTGCGCTAGAGGCTGGTCATATTC
ACTCTATGATCCTTTGGGGACCTCCAGGCACAGGTAAGACGACATTGGCGGAAGTGGCAGCAAACTATGCCAACGCTGAA
GTTGAGCGTGTGTCTGCGGTGACGTCTGGCGTGAAAGAAATCCGTGCAGCGATTGAGAAAGCGCGAGAGAACAAAATGGC
AGGCCGCCGCACCATCTTATTTGTGGATGAGGTGCACCGCTTCAACAAGTCTCAACAAGACGCGTTTTTACCGCATATCG
AAGATGGCACCGTTACCTTTATTGGTGCGACGACAGAAAACCCATCGTTTGAGTTAAACAACGCACTGCTGTCACGTGCG
CGTGTGTACAAGTTAACGTCTCTCGATAAAGACGAAATCTCACTGGCGCTGAATCAAGCGATCAGTGACAAAGAGCGTGG
GCTGGGGAATACGCCTGCACACTTCGCTGATAACGTATTAGATCGCTTAGCAGAACTGGTAAACGGTGATGCGCGCATGT
CTCTCAACTACCTTGAGCTGCTATACGACATGGCAGAAGACAATGCACAAGGTGAAAAAGAGATCACACTTAAGTTGCTT
GCGGAAGTAGCAGGGGAGAAAGTCTCTCGCTTCGATAACAAAGGCGACATTTGGTACGACTTAATCTCTGCTGTACACAA
GTCGATTCGTGGCTCTAACCCTGATGCCGCGCTTTACTGGGCTGCACGTATGATTGCAGCAGGTTGCGACCCTTTGTACA
TTGCTCGCCGCCTACTGGCGATTGCCTCTGAAGATGTGGGCAATGCGGACCCTCGCGCAATGCAAGTGGCACTTTCCGCT
TGGGATTGCTTTACTCGTGTTGGTCCGGCAGAAGGTGAGCGCGCGATTGCACAAGCGATCGTGTACTTAGCATGTGCGCC
AAAAAGTAATGCGGTATACGTGGCGTGGAAACAAGCGCTCACAGATGCTCATAACTTGCCTGAATATGAAGTGCCGCATC
ACCTTCGAAATGCACCGACCAGTTTGATGAAAGACATGGGTTATGGGGCAGAGTATCGTTACGCGCACGATGAGCCTGGC
GCTTACGCCGCAGGTGAGCAATATTTGCCGCCTGAAATGGGTGATCGTAGGTACTATCAGCCGACAAATCGTGGTCTAGA
GACCAAAATCGGCGAAAAGTTAGATTACTTGGCTACTTTAGACGCAAATAGCCCACAAAAGCGCTATGAAAAGTAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(191-270)

ATPase family associated with various cellular activities (AAA) (AAA)

(56-161)

MgsA AAA+ ATPase C terminal (MgsA_C)

(271-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.48

93.792

0.37