Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AABA07_RS04255 Genome accession   NZ_AP028608
Coordinates   844503..846251 (+) Length   582 a.a.
NCBI ID   WP_000828815.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 839503..851251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA07_RS04235 (TKY120829_08420) thrB 840617..841486 (+) 870 WP_000692438.1 homoserine kinase -
  AABA07_RS04240 (TKY120829_08430) - 841562..841714 (+) 153 WP_001835993.1 hypothetical protein -
  AABA07_RS04245 (TKY120829_08440) msrB 841781..842719 (+) 939 WP_000818200.1 peptide-methionine (R)-S-oxide reductase MsrB -
  AABA07_RS04250 (TKY120829_08450) - 842777..844501 (+) 1725 WP_000681674.1 ABC transporter ATP-binding protein -
  AABA07_RS04255 (TKY120829_08460) rcrQ 844503..846251 (+) 1749 WP_000828815.1 ABC transporter ATP-binding protein Regulator
  AABA07_RS04260 (TKY120829_08470) - 846346..846636 (+) 291 WP_000693474.1 hypothetical protein -
  AABA07_RS04265 (TKY120829_08480) - 846599..847858 (+) 1260 WP_000862491.1 TRZ/ATZ family protein -
  AABA07_RS04270 (TKY120829_08490) rplJ 848107..848607 (+) 501 WP_001287278.1 50S ribosomal protein L10 -
  AABA07_RS04275 (TKY120829_08500) rplL 848683..849051 (+) 369 WP_001196960.1 50S ribosomal protein L7/L12 -
  AABA07_RS04280 (TKY120829_08510) - 849252..849425 (+) 174 WP_000159598.1 hypothetical protein -
  AABA07_RS04285 - 849422..850197 (+) 776 Protein_848 replication initiator protein A -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64859.38 Da        Isoelectric Point: 7.6282

>NTDB_id=95826 AABA07_RS04255 WP_000828815.1 844503..846251(+) (rcrQ) [Streptococcus pneumoniae strain Sep3]
MKRQTVNQTLKRLALDLANHPFLLFLAFLGTIAQVGLSIYLPILIGQVIDQVLVAGSSPVFWQIFLQMLLVVIGNTLVQW
ANPLLYNRLIFSYTRDLRERIIHKLHRLPIAFVDRQGSGEMVSRVTTDIEQLAAGLTMIFNQFFIGVLMILVSILAMLQI
HLLMTLLVLLLTPLSMVISRFIAKRSYHLFQKQTETRGIQTQLIEESLSQQTIIQSFNAQTEFIQRLREAHDNYSGYSQS
AIFYSSTVNPSTRFVNALIYALLAGVGAYRIMMGSTLTVGRLVTFLNYVQQYTKPFNDISSVLAELQSALACVERIYGVL
DSPEVAETGKEVLTSDQVKGAISFKHVSFGYHPEKILIKNLSIDIPAGSKIAIVGPTGAGKSTLINLLMRFYPISSGDIL
LDGQSIYDYTRASLRQQFGMVLQETWLTQGTIHDNIAFGNPEASREQVIAAAKAANADFFIQQLPQGYDTKLENAGESLS
VGQAQLLTIARVFLAIPKILILDEATSSIDTRTEVLVQDAFAKLMKGRTSFIIAHRLSTIQDADLILVLVDGDIVEYGNH
QELMDRKGKYYQMQKAAAFSSE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=95826 AABA07_RS04255 WP_000828815.1 844503..846251(+) (rcrQ) [Streptococcus pneumoniae strain Sep3]
ATGAAACGACAAACTGTAAACCAGACGCTCAAACGTTTAGCCTTAGATTTAGCAAACCATCCCTTCCTCCTTTTCCTAGC
CTTTCTAGGAACTATTGCCCAAGTTGGCTTATCAATTTACCTACCTATTCTGATTGGGCAGGTCATTGACCAAGTCCTAG
TGGCTGGTTCATCACCAGTTTTTTGGCAGATTTTTCTCCAGATGCTCTTGGTGGTAATAGGAAATACTCTAGTACAATGG
GCCAATCCTCTCCTCTATAATCGTCTAATCTTCTCTTATACCAGAGATTTACGGGAGCGAATCATCCATAAACTCCATCG
GTTACCGATTGCCTTTGTAGATAGGCAAGGTAGTGGAGAGATGGTTAGTCGTGTAACCACGGACATCGAACAGTTGGCAG
CTGGCTTGACCATGATTTTTAACCAATTTTTCATTGGTGTTTTGATGATTTTGGTTAGTATTCTAGCCATGCTCCAAATT
CATCTCCTCATGACTCTCTTAGTCTTGCTGTTGACGCCACTGTCCATGGTGATTTCACGCTTTATTGCCAAGAGATCCTA
TCATCTCTTCCAGAAGCAAACAGAGACGAGGGGAATTCAGACTCAGTTGATTGAAGAATCGCTTAGCCAGCAGACTATAA
TCCAGTCCTTCAATGCTCAAACAGAATTTATCCAAAGATTGCGTGAGGCTCATGACAACTACTCAGGCTATTCTCAGTCA
GCCATCTTTTATTCTTCAACGGTCAATCCTTCGACTCGCTTTGTAAATGCACTCATTTATGCCCTTTTAGCTGGAGTAGG
AGCTTATCGTATCATGATGGGTTCAACCTTGACCGTCGGTCGTTTAGTGACTTTTTTGAACTATGTTCAGCAATACACCA
AGCCCTTTAATGATATTTCTTCAGTGCTAGCTGAGTTGCAAAGTGCTCTGGCTTGCGTAGAGCGTATCTATGGAGTCTTA
GATAGCCCTGAAGTGGCTGAAACAGGTAAGGAAGTCTTGACCAGTGACCAAGTTAAGGGAGCTATTTCCTTTAAACATGT
CTCTTTTGGCTACCATCCTGAAAAAATTTTGATTAAGAACTTGTCTATCGATATTCCAGCTGGTAGTAAGATAGCCATCG
TTGGTCCGACAGGTGCTGGAAAATCAACTCTTATCAATCTCCTTATGCGTTTTTATCCCATTAGCTCGGGAGATATCTTG
CTGGATGGGCAATCCATTTATGATTATACACGAGCATCATTGAGACAGCAGTTTGGCATGGTGCTTCAAGAAACCTGGCT
CACACAAGGGACCATTCATGATAATATTGCCTTTGGCAATCCTGAAGCCAGTCGAGAGCAAGTAATTGCTGCTGCCAAAG
CAGCTAATGCAGACTTTTTCATCCAACAGTTGCCACAGGGATACGATACCAAGTTGGAAAATGCTGGAGAATCTCTCTCT
GTCGGCCAAGCTCAGCTCTTGACCATAGCCCGAGTCTTTCTGGCTATTCCAAAGATTCTTATCTTAGACGAGGCAACTTC
TTCCATTGATACACGGACAGAAGTGCTGGTACAGGATGCCTTTGCAAAACTCATGAAGGGCCGCACAAGCTTCATCATTG
CTCACCGTTTGTCAACCATTCAGGATGCGGATTTAATTCTTGTCTTAGTAGATGGTGATATTGTTGAATATGGTAACCAT
CAAGAACTCATGGATAGAAAGGGTAAGTATTACCAAATGCAAAAAGCTGCGGCTTTTAGTTCTGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(359-507)

ABC transporter transmembrane region (ABC_membrane)

(24-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.434

97.766

0.366

Multiple sequence alignment