Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACIX90_RS02310 Genome accession   NZ_CP173319
Coordinates   502210..503550 (+) Length   446 a.a.
NCBI ID   WP_404811153.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain APL2401251E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 497210..508550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIX90_RS02285 (ACIX90_02285) msrB 497673..498068 (-) 396 WP_005620040.1 peptide-methionine (R)-S-oxide reductase MsrB -
  ACIX90_RS02290 (ACIX90_02290) gap 498291..499295 (+) 1005 WP_005619027.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  ACIX90_RS02295 (ACIX90_02295) - 499491..500543 (+) 1053 WP_005607179.1 rod shape-determining protein -
  ACIX90_RS02300 (ACIX90_02300) mreC 500660..501709 (+) 1050 WP_005600525.1 rod shape-determining protein MreC -
  ACIX90_RS02305 (ACIX90_02305) mreD 501709..502197 (+) 489 WP_005596506.1 rod shape-determining protein MreD -
  ACIX90_RS02310 (ACIX90_02310) rarA 502210..503550 (+) 1341 WP_404811153.1 replication-associated recombination protein A Machinery gene
  ACIX90_RS02315 (ACIX90_02315) znuB 503631..504416 (+) 786 WP_005596508.1 zinc ABC transporter permease subunit ZnuB -
  ACIX90_RS02320 (ACIX90_02320) - 504596..505393 (+) 798 WP_005596509.1 class II glutamine amidotransferase -
  ACIX90_RS02325 (ACIX90_02325) - 505473..506549 (-) 1077 WP_404811154.1 homoserine O-acetyltransferase -
  ACIX90_RS02330 (ACIX90_02330) - 506841..507530 (+) 690 WP_005619030.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50273.01 Da        Isoelectric Point: 6.9370

>NTDB_id=958091 ACIX90_RS02310 WP_404811153.1 502210..503550(+) (rarA) [Actinobacillus pleuropneumoniae strain APL2401251E]
MSSLSFDFSEDFRPLPARMRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHFDAEVERL
SAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYI
LKPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQGKRLNKALLAEVLG
ERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQVAINAWDCYT
RVGAYEGERAIAQAVIYLAVAPKSNAVYNAFNEAKRLAKEGKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHELNAYAAG
ENYFPPELKDTVFYHPTERGMEKQIKEKLQWLKAQDQASLQQRYKR

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=958091 ACIX90_RS02310 WP_404811153.1 502210..503550(+) (rarA) [Actinobacillus pleuropneumoniae strain APL2401251E]
ATGAGTAGTTTGTCCTTTGATTTTTCAGAAGATTTTAGACCGCTGCCCGCCAGAATGCGTCCACGCACACTGGCGGAGTA
TATCGGGCAAGCTCATCTTATCGGAGAAGGTAAACCGCTACGCCGCGCGATAGAAGCGGGACATTCTCATTCCATGATCT
TCTGGGGGCCTCCCGGTACCGGTAAAACGACATTAGCGGAAATTATCGCGCATCATTTTGATGCGGAAGTGGAACGCCTT
TCTGCGGTTACCAGCGGTGTGAAGGAAATCAGAGAAGCGATAGAGCGGGCTAAGCTCAATCGACAAACCGGCAGACGAAC
ATTACTTTTTGTCGATGAAGTACACCGTTTTAATAAAAGCCAACAAGACGCTTTTCTGCCGCATATTGAAGACGGCACCA
TTATTTTTATCGGTGCGACAACCGAGAATCCATCCTTTGAATTAAATAACGCCTTACTTTCCCGTGCGAAAATCTATATT
TTAAAACCGTTGCAAGCGGTTGAAATTGCACAAGTTTTAACTAATGCGCTTTACGATAAAGAACGAGGCTTAGGTAATGA
AAGCTATTACATCGAAGATAATGTGATTGAATTACTCGCCGATTACGTAAATGGGGATGCGAGATTCGCTTTAAATTGCT
TAGAACTGATGTCGGATATGGCAGAGATTTCCCCTCAAGGAAAACGCCTGAATAAAGCATTGTTAGCCGAAGTATTGGGA
GAGCGACAAGCTCGATTTGATAAAGGCGGTGATCGTTATTATGATTTGATTTCAGCATTGCATAAATCGGTACGAGGCTC
GTCACCGGACGGCGCGTTGTATTGGTATGCGAGAATTTTAACCGCAGGCGGCGATCCTTTGTATGTTGCGCGCCGATTAC
TGGCAATCGCTTCGGAAGATATTGGCAATGCTGACCCTAGAGCGATGCAAGTTGCGATTAACGCTTGGGATTGCTATACC
CGAGTCGGGGCTTATGAAGGCGAAAGAGCCATTGCGCAAGCGGTGATTTATTTAGCGGTTGCGCCTAAAAGTAATGCGGT
TTATAACGCTTTCAATGAAGCGAAACGTCTTGCGAAAGAGGGCAAAGATTACGATGTACCGGAACATCTGCGCAATGCAC
CGACTAAGTTGATGAAATCGTTAGGTTATGGTGAAGAGTATCGTTACGCACATCATGAACTGAACGCTTATGCCGCCGGC
GAAAACTACTTCCCGCCGGAATTAAAAGATACGGTATTTTATCACCCGACGGAACGGGGAATGGAAAAGCAAATTAAGGA
AAAATTGCAGTGGCTTAAAGCACAGGATCAAGCCAGCTTACAACAACGTTACAAGCGGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(19-143)

MgsA AAA+ ATPase C terminal (MgsA_C)

(266-432)

AAA C-terminal domain (AAA_assoc_2)

(186-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.898

94.843

0.388