Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACIX3D_RS02355 Genome accession   NZ_CP173318
Coordinates   514222..515562 (+) Length   446 a.a.
NCBI ID   WP_043991757.1    Uniprot ID   A0ABM6X1C2
Organism   Actinobacillus pleuropneumoniae strain APL2210214E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 509222..520562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIX3D_RS02330 (ACIX3D_02330) msrB 509686..510081 (-) 396 WP_005619026.1 peptide-methionine (R)-S-oxide reductase MsrB -
  ACIX3D_RS02335 (ACIX3D_02335) gap 510304..511308 (+) 1005 WP_005619027.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  ACIX3D_RS02340 (ACIX3D_02340) - 511503..512555 (+) 1053 WP_005607179.1 rod shape-determining protein -
  ACIX3D_RS02345 (ACIX3D_02345) mreC 512672..513721 (+) 1050 WP_005596505.1 rod shape-determining protein MreC -
  ACIX3D_RS02350 (ACIX3D_02350) mreD 513721..514209 (+) 489 WP_005596506.1 rod shape-determining protein MreD -
  ACIX3D_RS02355 (ACIX3D_02355) rarA 514222..515562 (+) 1341 WP_043991757.1 replication-associated recombination protein A Machinery gene
  ACIX3D_RS02360 (ACIX3D_02360) znuB 515643..516428 (+) 786 WP_005596508.1 zinc ABC transporter permease subunit ZnuB -
  ACIX3D_RS02365 (ACIX3D_02365) - 516608..517405 (+) 798 WP_005596509.1 class II glutamine amidotransferase -
  ACIX3D_RS02370 (ACIX3D_02370) - 517484..518560 (-) 1077 WP_005596521.1 homoserine O-acetyltransferase -
  ACIX3D_RS02375 (ACIX3D_02375) - 518855..519544 (+) 690 WP_005596523.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50259.00 Da        Isoelectric Point: 6.9329

>NTDB_id=958036 ACIX3D_RS02355 WP_043991757.1 514222..515562(+) (rarA) [Actinobacillus pleuropneumoniae strain APL2210214E]
MSSLSFDFSEDFRPLPARMRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHFDAEVERL
SAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYI
LKPLQAVEIVQVLTNALYDKERGLGNESYCIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQGKRLNKALLAEVLG
ERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQVAINAWDCYT
RVGAYEGERAIAQAVIYLAVAPKSNAVYNAFNEAKRFAKEGKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAG
ENYFPPELKDTVFYHPTERGMEKQIKEKLQWLKAQDQASLQQRYKR

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=958036 ACIX3D_RS02355 WP_043991757.1 514222..515562(+) (rarA) [Actinobacillus pleuropneumoniae strain APL2210214E]
ATGAGTAGTTTGTCCTTTGATTTTTCAGAAGATTTTAGACCGCTGCCCGCCAGAATGCGTCCACGCACACTGGCGGAGTA
TATCGGGCAAGCTCATCTTATCGGAGAAGGTAAACCGCTACGCCGCGCGATAGAAGCGGGACATTCCCATTCCATGATCT
TCTGGGGGCCTCCCGGTACCGGTAAAACGACATTAGCGGAAATTATCGCGCATCATTTTGATGCGGAAGTGGAACGCCTT
TCTGCGGTTACCAGCGGTGTGAAAGAAATCAGAGAAGCGATAGAGCGGGCTAAGCTCAATCGACAAACCGGCAGACGAAC
ATTACTTTTTGTCGATGAAGTACACCGTTTTAATAAAAGCCAACAAGATGCTTTTCTGCCGCATATTGAAGACGGCACCA
TTATTTTTATTGGTGCAACGACAGAAAATCCATCCTTTGAATTAAATAACGCCTTACTTTCTCGTGCAAAAATTTATATT
TTGAAGCCATTGCAAGCGGTCGAAATTGTGCAAGTTTTAACAAATGCCCTCTACGATAAAGAACGAGGATTAGGCAATGA
AAGCTATTGCATTGAAGATAATGTGATTGAATTACTCGCCGATTACGTAAATGGGGATGCGAGATTCGCTTTAAATTGCT
TAGAACTGATGTCGGATATGGCAGAGATTTCCCCTCAAGGAAAACGCCTGAATAAAGCATTGTTAGCCGAAGTATTGGGA
GAGCGACAAGCTCGATTTGATAAAGGCGGTGATCGTTATTATGATTTGATTTCAGCATTGCATAAGTCGGTACGGGGCTC
ATCACCGGACGGCGCGTTGTATTGGTATGCGAGAATTTTAACCGCAGGCGGTGATCCTTTGTATGTTGCGCGCCGATTAC
TGGCAATCGCTTCGGAAGATATTGGCAATGCTGACCCTAGAGCGATGCAAGTTGCGATTAACGCTTGGGATTGCTATACC
CGAGTCGGGGCTTACGAAGGTGAAAGAGCGATTGCGCAAGCGGTGATTTATTTAGCGGTTGCGCCAAAAAGTAATGCGGT
TTATAACGCTTTCAATGAAGCGAAACGTTTTGCGAAAGAGGGCAAAGATTACGATGTGCCGGAACATTTGCGTAATGCAC
CGACTAAGTTGATGAAATCGTTAGGTTACGGTGAAGAATATCGTTATGCGCACCACGAACCGAACGCTTATGCCGCCGGC
GAAAACTATTTCCCGCCGGAATTAAAAGATACCGTATTTTACCACCCGACGGAACGGGGAATGGAAAAGCAAATTAAGGA
AAAATTGCAGTGGCTTAAAGCACAGGATCAAGCCAGCTTACAACAACGTTACAAGCGGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(19-143)

MgsA AAA+ ATPase C terminal (MgsA_C)

(266-432)

AAA C-terminal domain (AAA_assoc_2)

(186-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.898

94.843

0.388