Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACIRXL_RS11320 Genome accession   NZ_CP173236
Coordinates   2283767..2285116 (+) Length   449 a.a.
NCBI ID   WP_410680316.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2278767..2290116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRXL_RS11295 (ACIRXL_11295) lrp 2278943..2279422 (+) 480 WP_017806582.1 leucine-responsive transcriptional regulator Lrp -
  ACIRXL_RS11300 (ACIRXL_11300) - 2279424..2282276 (+) 2853 WP_410678480.1 DNA translocase FtsK 4TM domain-containing protein -
  ACIRXL_RS11305 (ACIRXL_11305) lolA 2282358..2282978 (+) 621 WP_264255271.1 outer membrane lipoprotein chaperone LolA -
  ACIRXL_RS11310 (ACIRXL_11310) - 2283030..2283326 (-) 297 WP_110478985.1 HigA family addiction module antitoxin -
  ACIRXL_RS11315 (ACIRXL_11315) - 2283336..2283614 (-) 279 WP_264246545.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACIRXL_RS11320 (ACIRXL_11320) rarA 2283767..2285116 (+) 1350 WP_410680316.1 replication-associated recombination protein A Machinery gene
  ACIRXL_RS11325 (ACIRXL_11325) serS 2285237..2286526 (+) 1290 WP_115249899.1 serine--tRNA ligase -
  ACIRXL_RS11330 (ACIRXL_11330) prfA 2286778..2287860 (+) 1083 WP_410680315.1 peptide chain release factor 1 -
  ACIRXL_RS11345 (ACIRXL_11345) orn 2288281..2288829 (-) 549 WP_110478990.1 oligoribonuclease -
  ACIRXL_RS11350 (ACIRXL_11350) rsgA 2288901..2289959 (+) 1059 WP_410680313.1 small ribosomal subunit biogenesis GTPase RsgA -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50338.22 Da        Isoelectric Point: 6.5145

>NTDB_id=957793 ACIRXL_RS11320 WP_410680316.1 2283767..2285116(+) (rarA) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1]
MSNFAFDFAENDFRPLAARMRPTNLEEYYGQRHLIGVGKPLRKAIEAGHIHSMILWGPPGTGKTTLAEIIAQRINAEAER
ISAVTGGVKEIREAIERAKQNRLAGQRTILFVDEVHRFNKSQQDAFLPYIEDGTVIFICATTENPSFELNNALLSRARVY
VLKSLTAQEIEQVLQRAINDKEKGLGNLDLILEDNLLSMLAEYVNGDARLALNSLELMADMAEEGKNGKFLHRTLLTEVL
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVAIAAWDCF
TRVGAAEGERAIAQAIVYLAVAPKSNAVYQAFKAAKKHALESPDYDVPEHLRNAPTHLMKELGFGAEYRYAHNEENAYAA
GENYFPEALKDTQYYFPVTRGMEIQIREKLEKLRQLDEQSPTIRYKSGK

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=957793 ACIRXL_RS11320 WP_410680316.1 2283767..2285116(+) (rarA) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1]
ATGTCGAATTTTGCGTTTGATTTCGCTGAGAATGATTTTCGTCCGTTGGCGGCGAGAATGCGTCCTACGAATTTAGAGGA
ATATTACGGGCAACGCCATTTGATTGGTGTTGGTAAACCATTACGCAAAGCTATTGAGGCTGGGCATATTCATTCAATGA
TTTTATGGGGGCCGCCAGGGACGGGGAAGACGACCTTAGCAGAAATTATTGCGCAACGTATTAATGCGGAAGCGGAACGG
ATTTCAGCGGTAACGGGTGGGGTAAAAGAAATTCGTGAAGCCATTGAGCGCGCCAAACAAAATCGGCTTGCAGGGCAGCG
TACCATTTTATTTGTGGACGAAGTGCATCGTTTCAACAAAAGCCAGCAAGATGCGTTTTTGCCTTATATTGAAGATGGCA
CGGTGATTTTTATTTGCGCAACCACTGAAAATCCTTCTTTTGAACTGAATAACGCCTTGCTTTCGCGTGCGCGCGTGTAT
GTGCTGAAATCCTTAACCGCACAAGAAATCGAACAAGTGTTACAGCGCGCCATTAATGACAAAGAAAAAGGGCTAGGCAA
CCTTGATTTAATCTTAGAAGACAATTTGCTTTCAATGCTGGCGGAATATGTCAATGGCGATGCACGCCTTGCATTAAATA
GCCTTGAATTAATGGCGGATATGGCGGAAGAGGGCAAAAATGGCAAATTTTTGCACCGCACTTTATTAACGGAAGTGTTG
GGCGAACGGCAAGCCCGTTTTGATAAACAAGGCGATCGCTTTTATGATCTTATTTCAGCCTTGCATAAATCCGTGCGTGG
CTCAGCGCCTGATGCGGCTTTGTATTGGTATGCACGCATTTTAACCGCAGGGGGTGATCCGCTTTATGTAGCACGGCGGT
TGCTTGCTATTGCGTCAGAAGATGTGGGCAATGCCGATCCGCGCGCAATGCAAGTGGCCATTGCCGCTTGGGATTGCTTC
ACGCGCGTGGGGGCAGCAGAAGGGGAACGTGCCATTGCGCAAGCCATTGTTTACTTAGCCGTTGCGCCGAAAAGTAATGC
GGTGTATCAAGCTTTCAAAGCCGCGAAAAAGCACGCCTTAGAAAGCCCTGATTATGATGTGCCAGAGCATTTACGCAACG
CGCCAACTCATTTGATGAAAGAACTAGGTTTCGGCGCAGAATATCGTTATGCACATAATGAAGAAAATGCTTATGCTGCA
GGGGAAAATTATTTCCCAGAAGCGCTGAAAGATACCCAATATTATTTCCCTGTTACTCGGGGAATGGAAATTCAAATTCG
CGAAAAATTAGAAAAACTTCGCCAACTTGATGAGCAAAGCCCGACTATCCGTTATAAATCTGGTAAGTAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(53-159)

AAA C-terminal domain (AAA_assoc_2)

(188-266)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.858

94.432

0.376