Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACIRXM_RS09515 Genome accession   NZ_CP173234
Coordinates   1900196..1901545 (+) Length   449 a.a.
NCBI ID   WP_410686176.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1895196..1906545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRXM_RS09490 (ACIRXM_09495) lrp 1895373..1895852 (+) 480 WP_017806582.1 leucine-responsive transcriptional regulator Lrp -
  ACIRXM_RS09495 (ACIRXM_09500) - 1895854..1898709 (+) 2856 WP_410686169.1 DNA translocase FtsK 4TM domain-containing protein -
  ACIRXM_RS09500 (ACIRXM_09505) lolA 1898787..1899407 (+) 621 WP_410686172.1 outer membrane lipoprotein chaperone LolA -
  ACIRXM_RS09505 (ACIRXM_09510) - 1899459..1899755 (-) 297 WP_110478985.1 HigA family addiction module antitoxin -
  ACIRXM_RS09510 (ACIRXM_09515) - 1899765..1900043 (-) 279 WP_410686174.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACIRXM_RS09515 (ACIRXM_09520) rarA 1900196..1901545 (+) 1350 WP_410686176.1 replication-associated recombination protein A Machinery gene
  ACIRXM_RS09520 (ACIRXM_09525) serS 1901619..1902908 (+) 1290 WP_410686178.1 serine--tRNA ligase -
  ACIRXM_RS09525 (ACIRXM_09530) - 1903029..1903682 (+) 654 WP_410686179.1 IS1595 family transposase -
  ACIRXM_RS09530 (ACIRXM_09535) prfA 1903881..1904963 (+) 1083 WP_410686181.1 peptide chain release factor 1 -
  ACIRXM_RS09545 (ACIRXM_09550) orn 1905384..1905932 (-) 549 WP_110478990.1 oligoribonuclease -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50395.25 Da        Isoelectric Point: 6.2637

>NTDB_id=957731 ACIRXM_RS09515 WP_410686176.1 1900196..1901545(+) (rarA) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
MSNFAFDFADNDFRPLAARMRPTNLEEYYGQRHLIGVGKPLRKAIEAGHIHSMILWGPPGTGKTTLAEIIAQRINAEVER
ISAVTGGVKEIREAIERAKQNRLTGQRTILFVDEVHRFNKSQQDAFLPYIEDGTVTFIGATTENPSFELNNALLSRAKVY
ILKPLTPQDIEQVLQRAIEDKENGLGNEHFVLEDNVLQLLAEYVNGDARLALNSLELMADMAEEGKNGKILHRTLLTEVL
GERQARFDKQGDRFYDLISALHKSVRGSSPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRGMQVALAAWDCF
TRVGAAEGERAIAQAIVYLAVAPKSNAVYQAFNAAKKMAVESPDYDVPEHLRNAPTKLMKELGYGAEYRYAHNEENAYAA
GENYFPEALKETKFYFPTQRGMEIQIGEKLEKLRQLDEKSQIQRYKLVK

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=957731 ACIRXM_RS09515 WP_410686176.1 1900196..1901545(+) (rarA) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
ATGTCGAATTTTGCGTTTGATTTCGCTGATAATGATTTTCGTCCGTTGGCGGCGAGAATGCGTCCTACGAATTTAGAGGA
ATATTACGGGCAACGCCATTTGATTGGTGTAGGTAAACCATTACGCAAAGCCATTGAGGCTGGGCATATTCATTCAATGA
TTTTATGGGGGCCGCCAGGGACGGGGAAGACGACCTTAGCAGAAATTATTGCACAACGCATTAATGCGGAAGTGGAACGA
ATTTCAGCGGTAACGGGGGGAGTGAAAGAAATTCGCGAAGCCATTGAGCGAGCTAAACAAAATCGCCTAACAGGACAACG
CACGATTTTGTTTGTGGACGAAGTGCATCGCTTCAACAAAAGCCAGCAAGATGCGTTTTTGCCCTACATTGAAGACGGCA
CGGTCACTTTTATTGGGGCGACCACAGAAAATCCCTCCTTTGAGCTGAACAACGCCTTGCTTTCTCGTGCCAAAGTGTAC
ATTTTAAAACCGCTCACGCCCCAAGATATTGAGCAAGTTTTGCAGCGTGCTATAGAGGACAAAGAGAACGGGCTAGGCAA
TGAACATTTTGTGCTGGAAGATAATGTATTGCAGTTGCTGGCAGAATATGTGAATGGCGATGCCCGTTTGGCCTTGAACA
GCCTTGAATTAATGGCAGATATGGCAGAAGAGGGAAAAAATGGCAAAATTTTACACCGCACTTTATTAACGGAAGTGTTG
GGCGAACGGCAAGCCCGTTTTGATAAGCAGGGGGATCGCTTTTACGATCTGATTTCCGCTTTGCATAAATCCGTGCGAGG
TTCATCGCCTGATGCGGCGTTATATTGGTATGCACGTATTCTCACCGCAGGCGGCGACCCGCTTTATGTGGCACGGCGGT
TGCTTGCTATTGCGTCAGAAGATGTGGGCAATGCTGATCCGCGAGGAATGCAAGTGGCTCTTGCCGCGTGGGATTGCTTC
ACCCGTGTGGGGGCGGCTGAGGGGGAGCGCGCCATTGCCCAAGCGATCGTTTATTTAGCGGTTGCACCGAAAAGTAATGC
GGTGTATCAAGCCTTTAACGCTGCGAAGAAAATGGCAGTGGAAAGCCCTGATTATGATGTACCAGAGCATTTACGCAATG
CACCAACGAAGTTGATGAAAGAATTAGGCTATGGGGCGGAATATCGTTACGCTCATAATGAAGAAAATGCCTATGCGGCG
GGAGAAAATTATTTTCCAGAAGCCTTGAAAGAAACGAAATTTTATTTTCCAACGCAACGGGGAATGGAAATTCAGATCGG
TGAGAAATTAGAAAAATTACGCCAACTTGACGAAAAAAGCCAAATTCAACGCTATAAACTCGTCAAGTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(53-163)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)

AAA C-terminal domain (AAA_assoc_2)

(187-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

41.119

91.537

0.376