Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACIO05_RS07780 Genome accession   NZ_CP173232
Coordinates   1576478..1577827 (+) Length   449 a.a.
NCBI ID   WP_410678478.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1571478..1582827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO05_RS07755 (ACIO05_07755) lrp 1571654..1572133 (+) 480 WP_017806582.1 leucine-responsive transcriptional regulator Lrp -
  ACIO05_RS07760 (ACIO05_07760) - 1572135..1574987 (+) 2853 WP_410681457.1 DNA translocase FtsK 4TM domain-containing protein -
  ACIO05_RS07765 (ACIO05_07765) lolA 1575069..1575689 (+) 621 WP_264255271.1 outer membrane lipoprotein chaperone LolA -
  ACIO05_RS07770 (ACIO05_07770) - 1575741..1576037 (-) 297 WP_110478985.1 HigA family addiction module antitoxin -
  ACIO05_RS07775 (ACIO05_07775) - 1576047..1576325 (-) 279 WP_264246545.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACIO05_RS07780 (ACIO05_07780) rarA 1576478..1577827 (+) 1350 WP_410678478.1 replication-associated recombination protein A Machinery gene
  ACIO05_RS07785 (ACIO05_07785) serS 1577901..1579190 (+) 1290 WP_410678477.1 serine--tRNA ligase -
  ACIO05_RS07790 (ACIO05_07790) prfA 1579394..1580476 (+) 1083 WP_017807277.1 peptide chain release factor 1 -
  ACIO05_RS07805 (ACIO05_07805) orn 1580897..1581445 (-) 549 WP_110478990.1 oligoribonuclease -
  ACIO05_RS07810 (ACIO05_07810) rsgA 1581517..1582575 (+) 1059 WP_264255262.1 small ribosomal subunit biogenesis GTPase RsgA -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50454.38 Da        Isoelectric Point: 6.0890

>NTDB_id=957616 ACIO05_RS07780 WP_410678478.1 1576478..1577827(+) (rarA) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-3]
MSNFAFDFAENDFRPLAARMRPTNLEEYYGQRHLIGVGKPLRKAIEAGHIHSMILWGPPGTGKTTLAEIIAQRINAEAER
ISAVTGGVKEIREAIERAKQNRLAGQRTILFVDEVHRFNKSQQDAFLPYIEDGTVIFICATTENPSFELNNALLSRAKVY
ILKPLTPQDIEQVLQRAIEDKEKGLGNEHFVLEDNVLQLLAEYVNGDARLALNSLELMADMAEEGENGKILHRTLLTEVL
GERQARFDKQGDRFYDLISALHKSVRGSSPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRGMQVALAAWDCF
TRVGAAEGERAIAQAIVYLAVAPKSNAVYQAFNAAKKMAVESPDYDVPEHLRNAPTKLMKELGYGAEYRYAHNEENAYAA
GENYFPEALKETKFYFPTQRGMEIQISEKLEKLRQLDEKSQIQRYKLVK

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=957616 ACIO05_RS07780 WP_410678478.1 1576478..1577827(+) (rarA) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-3]
ATGTCGAATTTTGCGTTTGATTTCGCTGAGAATGATTTTCGTCCGTTGGCGGCGAGAATGCGTCCTACGAATTTAGAGGA
ATATTACGGGCAACGCCATTTGATTGGTGTTGGTAAACCATTACGCAAAGCTATTGAGGCTGGGCATATTCATTCAATGA
TTTTATGGGGGCCGCCAGGGACGGGGAAGACGACCTTAGCAGAAATTATTGCGCAACGTATTAATGCGGAAGCGGAACGG
ATTTCAGCGGTAACGGGTGGGGTAAAAGAAATTCGTGAAGCCATTGAGCGCGCCAAACAAAATCGGCTTGCAGGGCAGCG
TACCATTTTATTTGTGGACGAAGTGCATCGTTTCAACAAAAGCCAGCAAGATGCGTTTTTGCCTTATATTGAAGATGGCA
CGGTGATTTTTATTTGCGCAACCACTGAAAATCCTTCTTTTGAACTGAATAACGCCTTGCTTTCTCGTGCCAAAGTGTAC
ATTTTAAAACCGCTCACGCCCCAAGATATTGAGCAAGTTTTGCAGCGTGCTATAGAGGACAAAGAGAAAGGGCTAGGCAA
TGAACATTTTGTGCTGGAAGATAATGTATTGCAGTTGCTGGCAGAATATGTGAATGGCGATGCACGCCTTGCATTAAATA
GCCTTGAATTAATGGCAGATATGGCGGAAGAGGGAGAAAATGGCAAAATTTTACACCGCACTTTATTAACGGAAGTGCTG
GGGGAACGACAAGCTCGTTTTGATAAGCAGGGGGATCGTTTTTACGATCTGATTTCCGCTTTGCATAAATCCGTGCGAGG
TTCATCGCCTGATGCGGCGTTATATTGGTATGCACGTATTCTCACCGCAGGGGGTGATCCGCTTTATGTGGCACGGCGGT
TGCTTGCTATTGCGTCGGAAGATGTGGGCAATGCTGATCCGCGAGGAATGCAAGTGGCTCTTGCCGCGTGGGATTGCTTC
ACCCGCGTGGGAGCGGCTGAGGGAGAGCGAGCCATTGCACAAGCGATCGTTTATTTAGCGGTTGCACCAAAAAGTAATGC
GGTGTATCAAGCCTTTAACGCTGCGAAGAAAATGGCAGTAGAAAGCCCTGATTATGATGTACCAGAGCATTTACGCAATG
CACCAACGAAGTTGATGAAAGAATTGGGCTATGGGGCGGAATATCGTTACGCTCATAATGAAGAAAATGCTTATGCGGCG
GGAGAAAATTATTTTCCTGAAGCCTTGAAAGAAACGAAATTTTATTTTCCAACGCAACGGGGAATGGAAATTCAGATCAG
TGAGAAATTAGAAAAATTACGCCAACTTGACGAAAAAAGCCAAATTCAACGCTATAAACTCGTCAAGTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(53-163)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)

AAA C-terminal domain (AAA_assoc_2)

(187-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

41.119

91.537

0.376