Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   ACIO04_RS04840 Genome accession   NZ_CP173229
Coordinates   997519..997824 (+) Length   101 a.a.
NCBI ID   WP_017806953.1    Uniprot ID   A0A0F5EWR5
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 992519..1002824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO04_RS04800 (ACIO04_04800) tolB 993237..994526 (+) 1290 WP_410681049.1 Tol-Pal system beta propeller repeat protein TolB -
  ACIO04_RS04805 (ACIO04_04805) pal 994537..994989 (+) 453 WP_264256501.1 peptidoglycan-associated lipoprotein Pal -
  ACIO04_RS04825 (ACIO04_04825) comN 995629..996150 (+) 522 WP_410680849.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACIO04_RS04830 (ACIO04_04830) comO 996152..996871 (+) 720 WP_264245430.1 hypothetical protein Machinery gene
  ACIO04_RS04835 (ACIO04_04835) - 996873..997538 (+) 666 WP_410680851.1 DUF2572 family protein -
  ACIO04_RS04840 (ACIO04_04840) comQ 997519..997824 (+) 306 WP_017806953.1 DUF5374 domain-containing protein Machinery gene
  ACIO04_RS04845 (ACIO04_04845) recC 997836..1001240 (+) 3405 WP_410680853.1 exodeoxyribonuclease V subunit gamma -
  ACIO04_RS04850 (ACIO04_04850) - 1001278..1002096 (-) 819 WP_410680855.1 pyridoxal phosphatase -
  ACIO04_RS04855 (ACIO04_04855) araD 1002124..1002819 (-) 696 WP_410680857.1 L-ribulose-5-phosphate 4-epimerase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11774.67 Da        Isoelectric Point: 10.1103

>NTDB_id=957446 ACIO04_RS04840 WP_017806953.1 997519..997824(+) (comQ) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1]
MILKPYRLLKYKGMNLFSLLVTLTLFSGIFLSVNQWLSHQRQSAVRIFQDLQAWSIANNQQQRRLMGLDCQSQIEQNHII
FHISCDGNQVTVHYPTGNVRL

Nucleotide


Download         Length: 306 bp        

>NTDB_id=957446 ACIO04_RS04840 WP_017806953.1 997519..997824(+) (comQ) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1]
ATGATTTTGAAACCTTATAGATTGTTAAAATATAAAGGAATGAATTTGTTTTCTTTGCTGGTGACTTTAACGTTGTTTAG
TGGTATTTTTCTTTCCGTTAATCAGTGGCTTTCACATCAGCGACAAAGTGCGGTGAGAATTTTCCAAGATTTACAAGCTT
GGTCTATTGCAAATAATCAACAGCAGCGTCGGCTTATGGGGCTAGATTGCCAGTCTCAAATTGAACAGAACCACATTATT
TTCCATATTTCTTGCGATGGAAATCAAGTTACAGTGCATTATCCCACTGGGAATGTACGTTTATAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(62-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5EWR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

45.455

87.129

0.396