Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACIO07_RS09145 Genome accession   NZ_CP173228
Coordinates   1849197..1850546 (-) Length   449 a.a.
NCBI ID   WP_410681935.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1844197..1855546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO07_RS09115 (ACIO07_09120) rsgA 1844449..1845507 (-) 1059 WP_410681934.1 small ribosomal subunit biogenesis GTPase RsgA -
  ACIO07_RS09120 (ACIO07_09125) orn 1845579..1846127 (+) 549 WP_110478990.1 oligoribonuclease -
  ACIO07_RS09135 (ACIO07_09140) prfA 1846554..1847630 (-) 1077 WP_264246549.1 peptide chain release factor 1 -
  ACIO07_RS09140 (ACIO07_09145) serS 1847834..1849123 (-) 1290 WP_115249899.1 serine--tRNA ligase -
  ACIO07_RS09145 (ACIO07_09150) rarA 1849197..1850546 (-) 1350 WP_410681935.1 replication-associated recombination protein A Machinery gene
  ACIO07_RS09150 (ACIO07_09155) - 1850699..1850977 (+) 279 WP_264246545.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACIO07_RS09155 (ACIO07_09160) - 1850987..1851283 (+) 297 WP_110478985.1 HigA family addiction module antitoxin -
  ACIO07_RS09160 (ACIO07_09165) lolA 1851335..1851955 (-) 621 WP_264246543.1 outer membrane lipoprotein chaperone LolA -
  ACIO07_RS09165 (ACIO07_09170) - 1852037..1854889 (-) 2853 WP_410681937.1 DNA translocase FtsK 4TM domain-containing protein -
  ACIO07_RS09170 (ACIO07_09175) lrp 1854891..1855370 (-) 480 WP_017806582.1 leucine-responsive transcriptional regulator Lrp -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50328.08 Da        Isoelectric Point: 6.6729

>NTDB_id=957417 ACIO07_RS09145 WP_410681935.1 1849197..1850546(-) (rarA) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3]
MSNFAFDFAENDFRPLAARMRPTNLEEYYGQRHLIGVGKPLRKAIEAGHIHSMILWGPPGTGKTTLAEIIAQRINAEVER
ISAVTGGVKEIREAIERAKQNRLTGQRTILFVDEVHRFNKSQQDAFLPYIEDGTVTFIGATTENPSFELNNALLSRAKVY
ILKPLTSQDIEQVLQRAIQDKVKGLGNEHFVLEDNVLQLLAEYANGDARLALNSLELMTDMAEEGKNGKILHRTLLTEVL
GERQARFDKQGDRFYDLISALHKSVRGSSPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRGMQVALAAWDCF
TRVGAAEGERAIAQAIVYLAVAPKSNAVYQAFNAAKKMAVESPDYDVPEHLRNAPTHLMKELGYGAEYRYAHNEENAYAA
GENYFPEALKDTQYYFPVSRGMEIQIREKLEKLRQLDQQSTTIRYKSGK

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=957417 ACIO07_RS09145 WP_410681935.1 1849197..1850546(-) (rarA) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3]
ATGTCGAATTTTGCGTTTGATTTCGCTGAGAATGATTTTCGTCCGTTGGCGGCGAGAATGCGTCCTACGAATTTAGAAGA
ATATTACGGACAACGCCATTTGATTGGTGTTGGTAAACCATTACGCAAAGCCATTGAGGCTGGGCATATTCATTCAATGA
TTTTATGGGGGCCGCCAGGGACGGGGAAGACGACCTTAGCAGAAATTATTGCACAACGCATTAATGCGGAAGTGGAACGA
ATTTCAGCGGTAACGGGGGGAGTGAAAGAAATTCGCGAAGCCATTGAGCGAGCTAAACAAAATCGTCTAACAGGACAACG
CACGATTTTGTTTGTGGACGAAGTGCATCGCTTCAACAAAAGCCAGCAAGATGCCTTTTTGCCCTACATTGAAGATGGCA
CGGTCACTTTTATTGGGGCGACCACAGAAAATCCCTCTTTTGAGTTGAACAACGCCTTGCTTTCTCGTGCCAAAGTGTAC
ATTTTAAAACCGCTCACGTCCCAAGATATTGAGCAAGTTTTGCAGCGTGCCATTCAGGATAAAGTGAAAGGGTTAGGCAA
TGAGCATTTTGTATTGGAAGATAATGTGTTGCAACTACTGGCGGAATATGCGAATGGCGATGCTCGCTTAGCCTTGAACA
GCCTTGAATTAATGACGGATATGGCAGAAGAGGGAAAAAATGGCAAAATTTTACACCGCACCTTATTAACGGAAGTGCTA
GGGGAACGACAAGCCCGTTTTGATAAGCAGGGGGATCGCTTTTACGATCTGATTTCCGCTTTGCATAAATCCGTGCGAGG
TTCATCGCCCGATGCGGCGTTATATTGGTATGCACGTATTCTCACCGCAGGCGGCGACCCGCTTTATGTGGCACGGCGGT
TGCTTGCGATTGCGTCGGAAGATGTGGGCAATGCTGATCCGCGAGGAATGCAAGTGGCTCTTGCCGCGTGGGATTGCTTC
ACCCGTGTGGGGGCGGCTGAGGGGGAACGCGCCATTGCCCAAGCAATCGTCTATTTAGCAGTTGCACCAAAAAGTAATGC
GGTGTATCAAGCCTTTAACGCTGCGAAGAAAATGGCAGTGGAAAGCCCTGATTATGATGTGCCAGAGCATTTACGCAACG
CGCCAACTCATTTAATGAAAGAACTCGGCTATGGCGCAGAATATCGTTATGCACATAATGAAGAAAATGCTTATGCCGCA
GGGGAAAATTATTTCCCAGAAGCGCTGAAAGATACCCAATATTATTTCCCTGTTTCTCGGGGAATGGAAATTCAAATTCG
CGAAAAATTAGAAAAACTTCGCCAACTTGACCAGCAAAGCACAACTATCCGTTATAAATCTGGTAAGTAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(53-163)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)

AAA C-terminal domain (AAA_assoc_2)

(187-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.33

94.432

0.381