Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AABA14_RS06415 Genome accession   NZ_AP028607
Coordinates   1265644..1267392 (-) Length   582 a.a.
NCBI ID   WP_000828850.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1260644..1272392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA14_RS06370 (TKY123642_12590) - 1260738..1261325 (-) 588 WP_338168370.1 type II CAAX endopeptidase family protein -
  AABA14_RS06375 - 1261328..1261561 (-) 234 Protein_1259 transcriptional regulator -
  AABA14_RS06380 (TKY123642_12610) - 1261574..1261954 (-) 381 WP_000566531.1 arsenate reductase family protein -
  AABA14_RS06385 (TKY123642_12620) - 1261947..1262294 (-) 348 Protein_1261 hypothetical protein -
  AABA14_RS06390 (TKY123642_12630) - 1262281..1262532 (-) 252 Protein_1262 replication initiator protein A -
  AABA14_RS06395 (TKY123642_12640) - 1262532..1262702 (-) 171 WP_001168348.1 hypothetical protein -
  AABA14_RS06400 (TKY123642_12650) rplL 1262889..1263257 (-) 369 WP_001196960.1 50S ribosomal protein L7/L12 -
  AABA14_RS06405 (TKY123642_12660) rplJ 1263333..1263833 (-) 501 WP_001287278.1 50S ribosomal protein L10 -
  AABA14_RS06410 (TKY123642_12670) - 1264083..1265342 (-) 1260 WP_001820727.1 TRZ/ATZ family protein -
  AABA14_RS06415 (TKY123642_12680) rcrQ 1265644..1267392 (-) 1749 WP_000828850.1 ABC transporter ATP-binding protein Regulator
  AABA14_RS06420 (TKY123642_12690) - 1267394..1269118 (-) 1725 WP_000681691.1 ABC transporter ATP-binding protein -
  AABA14_RS06425 (TKY123642_12700) msrB 1269176..1270114 (-) 939 WP_000818207.1 peptide-methionine (R)-S-oxide reductase MsrB -
  AABA14_RS06430 (TKY123642_12710) - 1270143..1270289 (-) 147 WP_050217631.1 hypothetical protein -
  AABA14_RS06435 (TKY123642_12720) thrB 1270365..1271234 (-) 870 WP_000692438.1 homoserine kinase -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64901.42 Da        Isoelectric Point: 7.3120

>NTDB_id=95733 AABA14_RS06415 WP_000828850.1 1265644..1267392(-) (rcrQ) [Streptococcus pneumoniae strain Sep2]
MKRQTVNQTLKRLVVDLANHPFLLFLAFLGTIAQVGLSIYLPILIGQVIDQVLVAGSSPVFWQIFLQMLLVVIGNTLVQW
ANPLLYNRLIFSYTRDLRERIIHKLHRLPIAFADRQGNGEMVSRVTTDIEQLAAGLTMIFNQFFIGVLMILVSILAMLQI
HLLMTLLVLLLTPLSMVISRFIAKRSYHLFQKQTETRGIQTQLIEESLSQQTIIQSFNAQTEFIQRLREAHDNYSGYSQS
AIFYSSTVNPSTRFVNALIYALLAGVGAYRIMMGSTLTVGRLVTFLNYVQQYTKPFNDISSVLAELQSALACVERIYGVL
DSPEVAETGKEVLTSDQVKGAISFKHVSFGYHPEKILIKELSIDIPAGSKVAIVGPTGAGKSTLINLLMRFYPISSGDIL
LDGQSIYDYTRVSLRQQFGMVLQETWLTQGTIHDNIAFGNPEASREQVIAAAKAANADFFIQQLPQGYDTKLENAGESLS
VGQAQLLTIARVFLAIPKILILDEATSSIDTRTEVLVQDAFAKLMKGRTSFIIAHRLSTIQDADLILVLVDGDIVEYGNH
QELMDRKGKYYQMQKAAAFSSE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=95733 AABA14_RS06415 WP_000828850.1 1265644..1267392(-) (rcrQ) [Streptococcus pneumoniae strain Sep2]
ATGAAACGACAAACTGTAAACCAGACGCTCAAACGTTTAGTCGTAGATTTAGCAAACCATCCCTTCCTCCTTTTCCTAGC
CTTTCTAGGAACTATTGCCCAAGTTGGCTTATCAATTTACCTACCTATTCTGATTGGGCAGGTCATTGACCAAGTCCTAG
TGGCTGGTTCATCACCAGTTTTTTGGCAGATTTTTCTCCAGATGCTCTTGGTGGTAATAGGAAATACTCTGGTACAATGG
GCCAATCCTCTCCTCTATAATCGTCTAATCTTCTCTTATACCAGAGATTTACGAGAGCGAATCATCCATAAACTCCATCG
GTTACCGATTGCTTTTGCGGATCGGCAAGGCAATGGAGAGATGGTCAGTCGTGTAACCACGGATATCGAACAGTTGGCAG
CTGGCTTGACCATGATTTTTAACCAATTTTTCATTGGTGTTTTGATGATTTTGGTTAGTATTCTAGCCATGCTCCAAATT
CATCTCCTCATGACTCTCTTAGTCTTGCTGTTGACGCCACTGTCCATGGTGATTTCACGCTTTATTGCCAAGAGATCCTA
TCATCTCTTCCAGAAGCAAACAGAGACGAGGGGAATTCAGACTCAGTTGATTGAAGAATCGCTTAGCCAGCAGACTATAA
TCCAGTCCTTCAATGCTCAAACAGAATTTATCCAAAGATTGCGTGAGGCTCATGACAACTACTCAGGCTATTCTCAGTCA
GCCATCTTTTATTCTTCAACGGTCAATCCTTCGACTCGCTTTGTAAATGCACTCATTTATGCCCTTTTAGCTGGAGTAGG
AGCTTATCGTATCATGATGGGTTCAACCTTGACCGTCGGTCGTTTAGTGACTTTTTTGAACTATGTTCAGCAATACACCA
AGCCCTTTAATGATATTTCTTCAGTGCTAGCTGAGTTGCAAAGTGCTCTGGCTTGCGTAGAGCGTATCTATGGGGTCTTA
GATAGCCCTGAAGTGGCTGAAACAGGTAAGGAAGTCTTGACCAGTGACCAAGTTAAGGGAGCTATTTCCTTTAAACATGT
CTCTTTTGGCTACCATCCTGAAAAAATTTTGATTAAGGAGTTGTCTATCGATATTCCAGCTGGTAGTAAGGTAGCCATCG
TTGGTCCGACAGGTGCTGGAAAATCAACTCTTATCAATCTCCTTATGCGTTTTTATCCCATTAGCTCGGGAGATATCTTG
CTGGATGGGCAATCCATTTATGATTATACACGAGTATCATTGAGACAGCAGTTTGGTATGGTGCTTCAAGAAACCTGGCT
CACACAAGGGACCATTCATGATAATATTGCCTTTGGCAATCCTGAAGCCAGTCGAGAGCAAGTAATTGCTGCTGCCAAAG
CAGCTAATGCAGACTTTTTCATCCAACAGTTGCCACAGGGATACGATACCAAGTTGGAAAATGCTGGAGAATCTCTCTCT
GTCGGCCAAGCTCAGCTCTTGACCATAGCCCGAGTCTTTCTGGCTATTCCAAAGATTCTTATCTTAGACGAGGCAACTTC
TTCCATTGATACACGGACAGAAGTGCTGGTACAGGATGCCTTTGCAAAACTCATGAAGGGCCGCACAAGCTTCATCATTG
CTCACCGTTTGTCAACCATTCAGGATGCGGATTTAATTCTTGTCTTAGTAGATGGTGATATTGTTGAATATGGTAACCAT
CAAGAACTCATGGATAGAAAGGGTAAGTATTACCAAATGCAAAAAGCTGCGGCTTTTAGTTCTGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(24-295)

ABC transporter (ABC_tran)

(359-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.367

96.564

0.361

Multiple sequence alignment