Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PA5957_RS29980 Genome accession   NZ_CP173023
Coordinates   6398728..6399324 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain PA5957     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6393728..6404324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA5957_RS29960 (PA5957_05913) aroK 6394859..6395377 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PA5957_RS29965 (PA5957_05914) pilQ 6395389..6397533 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  PA5957_RS29970 (PA5957_05915) comL/pilP 6397587..6398111 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PA5957_RS29975 (PA5957_05916) pilO 6398108..6398731 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PA5957_RS29980 (PA5957_05917) pilN 6398728..6399324 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PA5957_RS29985 (PA5957_05918) pilM 6399324..6400388 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PA5957_RS29990 (PA5957_05919) - 6400573..6403044 (+) 2472 WP_043096086.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=956708 PA5957_RS29980 WP_003095839.1 6398728..6399324(-) (pilN) [Pseudomonas aeruginosa strain PA5957]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=956708 PA5957_RS29980 WP_003095839.1 6398728..6399324(-) (pilN) [Pseudomonas aeruginosa strain PA5957]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCGGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGATTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGTCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATTGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369