Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PA7078_RS01845 Genome accession   NZ_CP173019
Coordinates   415027..415623 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain PA7078     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410027..420623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA7078_RS01825 (PA7078_00363) aroK 411158..411676 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PA7078_RS01830 (PA7078_00364) pilQ 411688..413832 (-) 2145 WP_003114575.1 type 4a pilus secretin PilQ Machinery gene
  PA7078_RS01835 (PA7078_00365) comL/pilP 413886..414410 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PA7078_RS01840 (PA7078_00366) pilO 414407..415030 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PA7078_RS01845 (PA7078_00367) pilN 415027..415623 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PA7078_RS01850 (PA7078_00368) pilM 415623..416687 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PA7078_RS01855 (PA7078_00369) - 416872..419340 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=956221 PA7078_RS01845 WP_003095839.1 415027..415623(-) (pilN) [Pseudomonas aeruginosa strain PA7078]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=956221 PA7078_RS01845 WP_003095839.1 415027..415623(-) (pilN) [Pseudomonas aeruginosa strain PA7078]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369