Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ACF2JY_RS14305 Genome accession   NZ_CP172966
Coordinates   2753491..2754408 (-) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain cel     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2748491..2759408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF2JY_RS14280 (ACF2JY_14280) spx 2748847..2749242 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  ACF2JY_RS14285 (ACF2JY_14285) yjbC 2749423..2750001 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  ACF2JY_RS14290 (ACF2JY_14290) yjbB 2750166..2751383 (-) 1218 WP_080478438.1 MFS transporter -
  ACF2JY_RS14295 (ACF2JY_14295) oppF 2751491..2752408 (-) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  ACF2JY_RS14300 (ACF2JY_14300) oppD 2752410..2753486 (-) 1077 WP_072173823.1 oligopeptide ABC transporter ATP-binding protein OppD -
  ACF2JY_RS14305 (ACF2JY_14305) amiD 2753491..2754408 (-) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  ACF2JY_RS14310 (ACF2JY_14310) oppB 2754412..2755347 (-) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  ACF2JY_RS14315 (ACF2JY_14315) oppA 2755455..2757092 (-) 1638 WP_400558114.1 oligopeptide ABC transporter substrate-binding protein OppA -
  ACF2JY_RS14320 (ACF2JY_14320) trpS 2757836..2758828 (+) 993 WP_003245134.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=956156 ACF2JY_RS14305 WP_003232954.1 2753491..2754408(-) (amiD) [Bacillus subtilis strain cel]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=956156 ACF2JY_RS14305 WP_003232954.1 2753491..2754408(-) (amiD) [Bacillus subtilis strain cel]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCGAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGTGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364