Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Q6225_RS01575 Genome accession   NZ_CP148900
Coordinates   326695..327420 (-) Length   241 a.a.
NCBI ID   WP_025998648.1    Uniprot ID   A0AAW9AHG9
Organism   Vibrio alginolyticus strain I1B     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 321695..332420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6225_RS01550 (Q6225_01550) - 322848..323339 (+) 492 WP_005383002.1 type II secretion system protein M -
  Q6225_RS01555 (Q6225_01555) - 323341..324102 (+) 762 WP_062730773.1 type II secretion system protein N -
  Q6225_RS01560 (Q6225_01560) cysQ 324395..325222 (-) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  Q6225_RS01565 (Q6225_01565) nudE 325267..325836 (-) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  Q6225_RS01570 (Q6225_01570) nfuA 326013..326597 (-) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  Q6225_RS01575 (Q6225_01575) comF 326695..327420 (-) 726 WP_025998648.1 amidophosphoribosyltransferase Machinery gene
  Q6225_RS01580 (Q6225_01580) bioH 327505..328272 (+) 768 WP_005384724.1 pimeloyl-ACP methyl ester esterase BioH -
  Q6225_RS01585 (Q6225_01585) - 328397..328861 (+) 465 WP_005379316.1 hypothetical protein -
  Q6225_RS01590 (Q6225_01590) - 328966..331287 (-) 2322 WP_169644339.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27767.95 Da        Isoelectric Point: 9.2064

>NTDB_id=956109 Q6225_RS01575 WP_025998648.1 326695..327420(-) (comF) [Vibrio alginolyticus strain I1B]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSEPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKTSREQNLKGAFILNKQPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=956109 Q6225_RS01575 WP_025998648.1 326695..327420(-) (comF) [Vibrio alginolyticus strain I1B]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAAAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAGAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCAACCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.784

100

0.718
  comF Vibrio cholerae strain A1552

47.5

99.585

0.473