Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   WHN33_RS08025 Genome accession   NZ_CP148898
Coordinates   1526620..1529013 (+) Length   797 a.a.
NCBI ID   WP_012985677.1    Uniprot ID   -
Organism   Listeria seeligeri strain 43-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1521620..1534013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHN33_RS08005 - 1522772..1523920 (+) 1149 WP_012985679.1 cysteine desulfurase family protein -
  WHN33_RS08010 mnmA 1523939..1525054 (+) 1116 WP_003747801.1 tRNA 2-thiouridine(34) synthase MnmA -
  WHN33_RS08015 - 1525173..1525913 (+) 741 WP_012985678.1 alpha/beta hydrolase -
  WHN33_RS08020 - 1525956..1526594 (+) 639 WP_139591419.1 tetratricopeptide repeat protein -
  WHN33_RS08025 recD2 1526620..1529013 (+) 2394 WP_012985677.1 ATP-dependent RecD-like DNA helicase Machinery gene
  WHN33_RS08030 pieS 1529051..1530490 (-) 1440 WP_185468543.1 two component system sensor histidine kinase PieS -
  WHN33_RS08035 pieR 1530487..1531173 (-) 687 WP_194335921.1 two component system response regulator PieR -
  WHN33_RS08040 - 1531340..1532836 (+) 1497 WP_194352846.1 ABC transporter permease -
  WHN33_RS08045 - 1532845..1533540 (+) 696 WP_012985673.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 89960.11 Da        Isoelectric Point: 4.8404

>NTDB_id=956085 WHN33_RS08025 WP_012985677.1 1526620..1529013(+) (recD2) [Listeria seeligeri strain 43-1]
MAEQESLALFDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNADWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAKF
GQQFKAERFRKEMPQSRAGLINYLSGELFKGIGKVTAENIVDTIGDDAITRILSDPSLLNTVPKLPSGAAESLLASLQEN
QGLEHVMVGLNEYGFGPQLSMKIFQAYKQNAIEVLENNPYKLIEDVKGIGFQRADELGRKLGLGGNHPERLRAGILFMLD
SVCMQQGHVYMEQEALLAEVTYLLEESEGVRIDQAILMEQVEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQT
EYQEQFPQSEFLLALGELEERIGVHYGDSQREALAQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKDG
ATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQV
VLVGDQDQLPSVGPGQVLKDILHSKQIPTVALSDIYRQKDGSSIIEMAHNIKEGMLPADFTKNSADRSFFHCTVNQIGDV
VEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGELKYRVHDKVLQLINQPEKNVFNG
DIGEIISIIYAKENTEKQDMIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTGV
TRSKQFLILCGEEEAFRMGVERVDENKRNTTLSERLTSEDVMLEQMTNKRILTVENIMEIDPMIGMEGITPDQFMAG

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=956085 WHN33_RS08025 WP_012985677.1 1526620..1529013(+) (recD2) [Listeria seeligeri strain 43-1]
ATGGCTGAACAAGAATCACTCGCCTTATTTGATACACCAGAAGAATTATTTATGAAGGGCACGATGCTGTCCACCATTTT
TTATAATGCCGAAAACCTCTTTTCTGTTGTGCGAATTCTTGTAAAAGAAACGAATGCAGACTGGGATGAAAAAGATATTA
TTGTGACTGGTTTTTTTCCGGCACTTCATGAACAAGAAGTTTATACTTTTTATGGAAAAATGCAAGAACATGCCAAATTT
GGTCAACAATTCAAAGCAGAGCGTTTTAGGAAAGAAATGCCACAATCACGTGCGGGCTTAATTAATTATTTATCAGGAGA
ACTTTTTAAAGGTATTGGTAAAGTAACGGCAGAAAATATTGTCGATACAATTGGCGATGATGCGATTACTCGAATCTTAT
CTGATCCGAGCTTATTAAATACGGTTCCAAAACTGCCATCTGGTGCTGCAGAGAGTTTGCTTGCTTCACTTCAAGAAAAT
CAAGGTTTAGAACATGTCATGGTGGGACTTAATGAATATGGATTCGGTCCGCAACTTTCTATGAAAATTTTTCAAGCTTA
TAAGCAAAATGCGATTGAAGTGTTAGAAAATAATCCTTATAAATTAATTGAAGACGTCAAAGGAATTGGTTTTCAACGTG
CGGATGAACTTGGTCGGAAACTTGGCCTCGGAGGAAACCATCCAGAGCGGCTTCGTGCCGGGATTTTATTTATGCTAGAT
TCAGTTTGTATGCAGCAAGGGCATGTTTATATGGAACAAGAAGCCTTACTTGCAGAAGTGACTTATTTACTGGAAGAGAG
TGAAGGGGTTCGGATTGATCAAGCGATTTTAATGGAACAAGTCGAGAAACTCGCTGAAGAGCAAAAAATTATCACTGAAA
ATACACGTGTTTATATGCCCTCGCTTTATTATTCAGAAAGTGGGTTTGCTTATCATGTAAAAAGAATGCTTAAACAAACG
GAATACCAAGAACAATTTCCTCAGTCGGAATTTTTGCTCGCGCTCGGTGAATTAGAAGAGCGAATTGGTGTTCATTACGG
CGATTCCCAGCGTGAAGCCTTAGCACAAGCATTAATGTCACCGATGCTTGTGCTAACTGGTGGTCCTGGAACAGGGAAAA
CGACTGTTATTAAAGGAATTGTGGAATTATATGCAGAATTAAATGGTGTAAGTCTCGACCCACATGCCTATAAAGATGGA
GCGACTTTCCCAGTGTTATTAGCAGCTCCAACTGGAAGAGCGGCTAAACGGATGTCAGAATCTACAGGGCTTCCAGCAAT
GACTATTCACCGTTTGCTTGGTATGAATGGGCAGGAACAAATGGATGATGATGCGGAAAGATTAATTGATGGGCGACTTT
TAATTGTGGACGAAATGTCGATGGTTGATATTTGGCTTGCTAATCAGCTGTTTCGTGCATTACCAGCTCATATGCAAGTG
GTGTTAGTTGGCGACCAAGATCAGTTACCATCAGTCGGACCAGGGCAAGTTTTAAAAGATATCCTTCATTCGAAACAAAT
CCCAACCGTTGCACTTTCTGATATTTATCGGCAAAAAGATGGTTCTTCTATCATTGAAATGGCTCATAATATCAAAGAGG
GAATGCTCCCAGCCGATTTCACAAAAAACAGTGCTGATCGGTCGTTCTTTCATTGTACTGTGAACCAAATTGGCGATGTC
GTGGAGCAAGTTGTAAAAAATGCTAAAAATAAAGGATTTCGAGCAAAAGACATCCAAGTGTTAGCACCAATGTATCGAGG
ACCAGCAGGAATTGATATTTTAAATAAAAAATTGCAAGAAATTTTCAATCCTAATGATACTGGCCGACGAAAAGAAGTGC
AATTTGGCGAATTAAAATATCGTGTCCATGACAAAGTGTTGCAATTAATTAATCAACCTGAAAAAAATGTCTTTAATGGT
GATATAGGCGAAATTATCTCGATTATTTATGCCAAAGAAAATACGGAAAAACAAGATATGATTGTGGTGCAATTTGATCA
AACAGAAGTTTCTTATTACCGGCAAGAATTCAATCAACTGACTCATGCATACTGTTGTTCCATTCATAAAGCTCAGGGTA
GTGAGTTTCCTATTGTAATTATGCCGATTGTACGTAGTTATTACCGAATGCTTAGACGTGACCTGCTTTATACGGGAGTC
ACTCGAAGTAAACAATTTTTGATTCTTTGCGGAGAAGAAGAGGCGTTTCGGATGGGAGTGGAGCGGGTCGATGAAAATAA
ACGTAACACGACACTTTCAGAACGTTTAACTAGCGAAGATGTAATGCTAGAACAAATGACGAACAAACGAATATTAACGG
TTGAAAACATTATGGAGATTGACCCAATGATTGGAATGGAAGGAATAACACCAGATCAGTTTATGGCAGGTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

AAA domain (AAA_30)

(346-553)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.868

98.871

0.572