Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   ACFELH_RS26250 Genome accession   NZ_CP172858
Coordinates   5644909..5645433 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 238630E_ID008     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5639909..5650433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFELH_RS26235 (ACFELH_26235) aroB 5641025..5642131 (-) 1107 WP_033886361.1 3-dehydroquinate synthase -
  ACFELH_RS26240 (ACFELH_26240) aroK 5642181..5642699 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ACFELH_RS26245 (ACFELH_26245) pilQ 5642711..5644855 (-) 2145 WP_003135767.1 type 4a pilus secretin PilQ Machinery gene
  ACFELH_RS26250 (ACFELH_26250) comL/pilP 5644909..5645433 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ACFELH_RS26255 (ACFELH_26255) pilO 5645430..5646053 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACFELH_RS26260 (ACFELH_26260) pilN 5646050..5646646 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  ACFELH_RS26265 (ACFELH_26265) pilM 5646646..5647710 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  ACFELH_RS26270 (ACFELH_26270) - 5647895..5650363 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=955569 ACFELH_RS26250 WP_003095836.1 5644909..5645433(-) (comL/pilP) [Pseudomonas aeruginosa strain 238630E_ID008]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=955569 ACFELH_RS26250 WP_003095836.1 5644909..5645433(-) (comL/pilP) [Pseudomonas aeruginosa strain 238630E_ID008]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362