Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   WHY18_RS10605 Genome accession   NZ_CP148720
Coordinates   2325173..2327029 (-) Length   618 a.a.
NCBI ID   WP_198615001.1    Uniprot ID   -
Organism   Clostridium perfringens strain Z1322PCP0048     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2320173..2332029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHY18_RS10590 (WHY18_10590) - 2321160..2322158 (-) 999 WP_136001969.1 2-hydroxyacid dehydrogenase -
  WHY18_RS10595 (WHY18_10595) - 2322476..2323525 (-) 1050 WP_011591597.1 AEC family transporter -
  WHY18_RS10600 (WHY18_10600) - 2323779..2324660 (-) 882 WP_338854327.1 hypothetical protein -
  WHY18_RS10605 (WHY18_10605) rcrQ 2325173..2327029 (-) 1857 WP_198615001.1 ABC transporter ATP-binding protein Regulator
  WHY18_RS10610 (WHY18_10610) - 2327022..2329319 (-) 2298 WP_338854328.1 ABC transporter ATP-binding protein -
  WHY18_RS10615 (WHY18_10615) - 2329643..2330089 (+) 447 WP_061426416.1 MarR family transcriptional regulator -
  WHY18_RS10620 (WHY18_10620) - 2330355..2331149 (-) 795 WP_332830397.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 68417.18 Da        Isoelectric Point: 6.5230

>NTDB_id=955331 WHY18_RS10605 WP_198615001.1 2325173..2327029(-) (rcrQ) [Clostridium perfringens strain Z1322PCP0048]
MSKERKGGMGGPMGRMGGGPRAVEKAKDFKGTMKKLGVYLKPYSLSIAIVILFAIGSAAFSIVGPKILGKATTKIFEGLV
QKISGVPDASIDFGYIGNIAMILVALYLVSSLFGIIQSFIMSGVAQKVSYNLRKQISEKMDTLPLNYFDTRTNGEVLSRI
TNDVDTVNQTLNQSLSQIITSVVTLIGVLIMMFSISWIMTLATFIILPVSMVLISLVVKKSQKYFKSQQEYLGHLNGQVE
EVYGGHNIMKAFNREEASTKDFDELNNTLYKSAWKSQFLSGMMMPIMSFVGNLGYVLVSILGGWLTIKSVITVGDIQAFI
QYVRSFNQPIAQMAQVANIMQSTAAAAERVFEFLDEKDEVKDPVNSVDPSEIRGEVEFEDVHFGYNPDKIIINDFSVDVK
PGQKVAIVGPTGAGKTTIVKLLMRFYDINSGSIKIDGHDIRDFKRADLRNLFGMVLQDTWLFNGTIMENLRYGRLDATDA
EVKEAAKAAHVDHFVKTLPDGYNMVLNEEASNISQGQKQLLTIARAFLKDPKLLILDEATSSVDTRTELLIQKAMEKLME
GRTSFIIAHRLSTIRDADLILVMKDGDIVEQGNHEELLEKGGFYSSLYNSQFEQSSAS

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=955331 WHY18_RS10605 WP_198615001.1 2325173..2327029(-) (rcrQ) [Clostridium perfringens strain Z1322PCP0048]
ATGAGTAAAGAAAGAAAAGGCGGAATGGGCGGCCCAATGGGTAGAATGGGCGGAGGCCCAAGAGCCGTTGAAAAAGCAAA
AGATTTTAAAGGAACAATGAAAAAGCTTGGGGTTTATTTAAAACCCTATAGTTTATCTATAGCTATTGTAATATTATTTG
CTATAGGAAGTGCTGCCTTCTCAATTGTAGGACCTAAGATTTTAGGTAAAGCTACTACTAAAATATTTGAAGGTTTAGTT
CAAAAGATATCAGGGGTACCAGATGCTTCTATAGATTTTGGATATATTGGTAATATAGCAATGATTTTAGTAGCTTTATA
CTTAGTAAGTTCATTATTTGGGATTATACAATCTTTTATAATGTCAGGAGTTGCTCAAAAGGTTTCTTATAATTTAAGAA
AGCAAATATCAGAAAAAATGGATACTTTACCTCTTAATTATTTTGATACAAGAACAAATGGAGAGGTTTTATCAAGAATT
ACAAATGACGTTGATACAGTGAACCAAACTTTAAATCAAAGTTTATCACAGATAATAACTTCAGTGGTTACTTTAATTGG
AGTATTAATAATGATGTTCTCAATAAGTTGGATTATGACTTTAGCAACATTTATAATACTTCCAGTTTCAATGGTTCTTA
TATCTTTAGTTGTTAAGAAGTCTCAAAAATACTTTAAATCTCAACAAGAATACTTAGGTCATCTTAATGGTCAAGTAGAA
GAGGTTTATGGTGGACACAATATAATGAAAGCTTTCAATAGAGAAGAAGCTTCAACTAAAGACTTTGATGAATTAAACAA
TACTTTATATAAATCAGCTTGGAAATCTCAATTCTTATCAGGTATGATGATGCCAATTATGTCTTTTGTAGGAAACTTAG
GATATGTTTTAGTTTCAATACTTGGTGGATGGTTAACAATTAAAAGTGTTATAACTGTTGGGGATATACAAGCATTTATC
CAATATGTACGTTCATTTAACCAACCAATAGCTCAGATGGCTCAGGTTGCAAATATAATGCAATCAACAGCAGCGGCTGC
TGAGAGAGTATTTGAATTCTTAGATGAAAAGGATGAGGTTAAAGATCCAGTTAATTCAGTAGATCCTTCAGAAATAAGAG
GAGAAGTTGAATTTGAAGATGTTCACTTTGGATATAACCCAGATAAGATAATAATAAATGATTTCTCAGTAGATGTTAAA
CCAGGGCAAAAGGTGGCTATTGTTGGACCTACAGGAGCAGGTAAAACTACAATAGTTAAATTATTAATGAGATTCTACGA
TATAAATAGTGGAAGCATTAAGATTGATGGTCATGATATAAGAGACTTTAAGCGTGCTGATTTACGTAACTTATTTGGTA
TGGTTCTTCAAGATACATGGTTATTTAATGGAACTATAATGGAGAATTTACGTTATGGAAGACTAGATGCAACAGATGCT
GAAGTTAAAGAAGCTGCTAAGGCGGCTCATGTTGATCATTTCGTAAAAACTTTACCAGATGGATATAATATGGTTTTAAA
TGAAGAAGCAAGTAATATATCACAAGGACAAAAGCAGCTTTTAACAATTGCTAGAGCTTTCTTAAAAGATCCTAAGCTAT
TAATACTTGATGAGGCTACAAGTTCAGTTGATACTCGTACAGAGCTTTTAATACAAAAAGCCATGGAAAAACTTATGGAA
GGAAGAACAAGCTTTATTATAGCCCACAGACTTTCTACTATACGTGATGCAGACTTAATCCTTGTTATGAAGGATGGAGA
TATAGTTGAACAAGGAAATCATGAAGAGCTTCTAGAAAAAGGTGGATTCTATTCAAGTCTTTACAATAGCCAATTTGAAC
AAAGTAGTGCTTCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(48-329)

ABC transporter (ABC_tran)

(393-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.934

95.307

0.485