Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   WHY20_RS02465 Genome accession   NZ_CP148705
Coordinates   576758..578614 (+) Length   618 a.a.
NCBI ID   WP_139932816.1    Uniprot ID   -
Organism   Clostridium perfringens strain Z1322PCP0088     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 571758..583614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHY20_RS02450 (WHY20_02450) - 572637..573431 (+) 795 WP_208343192.1 HAD family hydrolase -
  WHY20_RS02455 (WHY20_02455) - 573698..574144 (-) 447 WP_061426416.1 MarR family transcriptional regulator -
  WHY20_RS02460 (WHY20_02460) - 574468..576765 (+) 2298 WP_338912620.1 ABC transporter ATP-binding protein -
  WHY20_RS02465 (WHY20_02465) rcrQ 576758..578614 (+) 1857 WP_139932816.1 ABC transporter ATP-binding protein Regulator
  WHY20_RS02470 (WHY20_02470) - 579132..580013 (+) 882 WP_139932817.1 hypothetical protein -
  WHY20_RS02475 (WHY20_02475) - 580268..581317 (+) 1050 WP_011591597.1 AEC family transporter -
  WHY20_RS02480 (WHY20_02480) - 581635..582633 (+) 999 WP_003455390.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 68434.13 Da        Isoelectric Point: 6.1467

>NTDB_id=955249 WHY20_RS02465 WP_139932816.1 576758..578614(+) (rcrQ) [Clostridium perfringens strain Z1322PCP0088]
MSKERKGGMGGPMGRMGGGPRAVEKAKDFKGTMKKLGVYLKPYSLSIAIVILFAIGSAAFSIVGPKILGKATTKIFEGLV
QKISGVPDASIDFGYIGNIAMILVALYLVSSLFGIIQSFIMSGVAQKVSYNLRKQISEKMDTLPLNYFDTRTNGEVLSRI
TNDVDTVNQTLNQSLSQIITSVVTLIGVLIMMFSISWIMTLATFIILPVSMVLISLVVKKSQKYFKSQQEYLGHLNGQVE
EVYGGHNIMKAFNREEASTKDFDELNNTLYKSAWKSQFLSGMMMPIMSFVGNLGYVLVSILGGWLTIKSVITVGDIQAFI
QYVRSFNQPIAQMAQVANIMQSTAAAAERVFEFLDEEDEVKDPVNSVDPSEIRGEVEFEDVHFGYNPDKIIINDFSVDVK
PGQKVAIVGPTGAGKTTIVKLLMRFYDINSGSIKIDGHDIRDFKRADLRNLFGMVLQDTWLFNGTIMENLRYGRLDSTDA
EVKEAAKAAHVDHFVKTLPDGYNMVLNEEASNISQGQKQLLTIARAFLKDPKLLILDEATSSVDTRTELLIQKAMEKLME
GRTSFIIAHRLSTIRDADLILVMKDGDIVEQGNHEELLEKGGFYSSLYNSQFEQSSAS

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=955249 WHY20_RS02465 WP_139932816.1 576758..578614(+) (rcrQ) [Clostridium perfringens strain Z1322PCP0088]
ATGAGTAAAGAAAGAAAAGGCGGAATGGGCGGCCCAATGGGTAGAATGGGTGGAGGTCCAAGAGCCGTTGAAAAAGCAAA
AGATTTTAAAGGAACAATGAAAAAGCTTGGGGTTTATTTAAAACCCTATAGTTTATCTATAGCTATTGTAATATTATTTG
CTATAGGAAGTGCTGCCTTCTCAATTGTAGGACCTAAGATTTTAGGTAAAGCTACTACAAAAATATTTGAAGGTTTAGTT
CAAAAGATATCAGGGGTACCAGATGCTTCTATAGATTTTGGATACATTGGAAATATAGCAATGATTTTAGTAGCTCTATA
CTTAGTAAGTTCATTATTTGGGATTATACAATCTTTTATAATGTCAGGAGTTGCTCAAAAGGTTTCTTATAACTTAAGAA
AGCAAATATCAGAAAAAATGGATACTTTACCTCTTAATTATTTTGATACAAGAACAAATGGAGAGGTTTTATCAAGAATT
ACAAATGACGTTGATACAGTGAACCAAACTTTAAATCAAAGTTTATCACAAATAATAACTTCAGTAGTTACTTTAATTGG
AGTATTAATAATGATGTTCTCAATAAGTTGGATTATGACTTTAGCAACATTTATAATACTTCCAGTTTCAATGGTTCTTA
TATCTTTAGTTGTTAAGAAGTCTCAAAAATACTTTAAATCTCAACAAGAATACTTAGGTCATCTTAATGGTCAAGTAGAA
GAGGTTTATGGTGGACACAATATAATGAAAGCCTTCAATAGAGAAGAAGCTTCAACTAAAGACTTTGATGAATTAAACAA
TACTTTATATAAATCAGCTTGGAAATCTCAATTCTTATCAGGTATGATGATGCCAATTATGTCTTTTGTAGGAAACTTAG
GATATGTTTTAGTTTCAATACTTGGTGGATGGTTAACAATTAAAAGTGTTATAACTGTTGGGGATATACAAGCATTTATA
CAATATGTACGTTCATTTAACCAACCAATAGCTCAGATGGCTCAGGTTGCAAATATAATGCAATCAACAGCGGCTGCTGC
TGAGAGAGTATTTGAATTCTTAGATGAAGAGGATGAGGTTAAAGATCCAGTTAATTCAGTAGATCCTTCAGAAATAAGAG
GAGAAGTTGAATTTGAAGATGTTCACTTTGGATATAACCCAGATAAGATAATAATAAATGATTTCTCAGTAGATGTTAAA
CCAGGGCAAAAGGTGGCTATTGTTGGACCTACAGGAGCAGGTAAAACTACAATAGTTAAATTATTAATGAGATTCTACGA
TATAAATAGTGGAAGCATTAAGATTGATGGTCATGATATAAGAGACTTTAAGCGTGCTGATTTACGTAACTTATTTGGTA
TGGTTCTTCAAGATACATGGTTATTTAATGGAACTATAATGGAGAATTTACGTTATGGAAGACTAGATTCAACTGATGCT
GAAGTTAAAGAAGCTGCTAAGGCTGCCCATGTTGATCATTTTGTAAAAACTTTACCAGATGGATATAATATGGTTTTAAA
TGAAGAAGCAAGTAATATATCACAAGGACAAAAGCAGCTTTTAACAATTGCTAGAGCTTTCTTAAAAGATCCTAAGCTAT
TAATACTTGATGAGGCTACAAGTTCAGTTGATACTCGTACAGAGCTTTTAATACAAAAAGCCATGGAAAAACTTATGGAA
GGAAGAACAAGCTTTATTATAGCCCACAGACTTTCTACTATACGTGATGCAGACTTAATCCTTGTTATGAAGGATGGAGA
TATAGTTGAACAAGGAAATCATGAAGAGCTTCTAGAAAAAGGTGGATTCTATTCAAGCCTTTACAATAGCCAATTTGAAC
AAAGTAGTGCTTCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(48-329)

ABC transporter (ABC_tran)

(393-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.104

95.307

0.487