Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   WHY17_RS04095 Genome accession   NZ_CP148701
Coordinates   900124..901980 (+) Length   618 a.a.
NCBI ID   WP_061426418.1    Uniprot ID   A0A127EFL3
Organism   Clostridium perfringens strain Z1322PCP0092     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 895124..906980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHY17_RS04080 (WHY17_04080) - 895940..896734 (+) 795 WP_338852243.1 HAD family hydrolase -
  WHY17_RS04085 (WHY17_04085) - 897064..897510 (-) 447 WP_124041614.1 MarR family transcriptional regulator -
  WHY17_RS04090 (WHY17_04090) - 897834..900131 (+) 2298 WP_338852245.1 ABC transporter ATP-binding protein -
  WHY17_RS04095 (WHY17_04095) rcrQ 900124..901980 (+) 1857 WP_061426418.1 ABC transporter ATP-binding protein Regulator
  WHY17_RS04100 (WHY17_04100) - 902492..903373 (+) 882 WP_338852247.1 hypothetical protein -
  WHY17_RS04105 (WHY17_04105) - 903627..904676 (+) 1050 WP_011591597.1 AEC family transporter -
  WHY17_RS04110 (WHY17_04110) - 904994..905992 (+) 999 WP_136001969.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 68433.18 Da        Isoelectric Point: 6.5230

>NTDB_id=955233 WHY17_RS04095 WP_061426418.1 900124..901980(+) (rcrQ) [Clostridium perfringens strain Z1322PCP0092]
MSKERKGGMGGPMGRMGGGPRAVEKAKDFKGTMKKLGVYLKPYSLSIAIVILFAIGSAAFSIVGPKILGKATTKIFEGLV
QKISGVPDASIDFGYIGNIAMILVALYLVSSLFGIIQSFIMSGVAQKVSYNLRKQISEKMDTLPLNYFDTRTNGEVLSRI
TNDVDTVNQTLNQSLSQIITSVVTLIGVLIMMFSISWIMTLATFIILPVSMVLISLVVKKSQKYFKSQQEYLGHLNGQVE
EVYGGHNIMKAFNREEASTKDFDELNNTLYKSAWKSQFLSGMMMPIMSFVGNLGYVLVSILGGWLTIKSVITVGDIQAFI
QYVRSFNQPIAQMAQVANIMQSTAAAAERVFEFLDEKDEVKDPVNSVDPSEIRGEVEFEDVHFGYNPDKIIINDFSVDVK
PGQKVAIVGPTGAGKTTIVKLLMRFYDINSGSIKIDGHDIRDFKRADLRNLFGMVLQDTWLFNGTIMENLRYGRLDSTDA
EVKEAAKAAHVDHFVKTLPDGYNMVLNEEASNISQGQKQLLTIARAFLKDPKLLILDEATSSVDTRTELLIQKAMEKLME
GRTSFIIAHRLSTIRDADLILVMKDGDIVEQGNHEELLEKGGFYSSLYNSQFEQSSAS

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=955233 WHY17_RS04095 WP_061426418.1 900124..901980(+) (rcrQ) [Clostridium perfringens strain Z1322PCP0092]
ATGAGTAAAGAAAGAAAAGGCGGAATGGGCGGCCCAATGGGTAGAATGGGTGGAGGTCCAAGAGCCGTTGAAAAAGCAAA
AGATTTTAAAGGAACAATGAAAAAGCTTGGGGTTTATTTAAAACCCTATAGTTTATCTATAGCTATTGTAATATTATTTG
CTATAGGAAGTGCAGCCTTCTCAATAGTTGGACCTAAGATTTTAGGTAAAGCTACTACAAAAATATTTGAAGGTTTAGTT
CAAAAGATATCAGGGGTACCAGATGCTTCTATAGATTTTGGATATATTGGCAATATAGCAATGATTTTAGTAGCTCTATA
CTTAGTAAGTTCATTATTTGGGATTATACAATCTTTTATAATGTCAGGAGTTGCTCAAAAGGTTTCTTATAACTTAAGAA
AGCAAATATCAGAAAAAATGGATACTTTACCTCTTAATTATTTTGATACAAGAACAAATGGAGAGGTTTTATCAAGAATT
ACAAATGACGTTGATACAGTGAACCAAACTTTAAATCAAAGTTTATCACAAATAATAACTTCAGTAGTTACTTTAATTGG
GGTATTAATAATGATGTTCTCAATAAGTTGGATTATGACTTTAGCAACATTTATAATACTTCCAGTTTCAATGGTTCTTA
TATCTTTAGTTGTTAAGAAGTCTCAAAAATACTTTAAATCTCAACAAGAATACTTAGGTCATCTTAATGGTCAAGTAGAA
GAGGTTTATGGTGGACACAATATAATGAAAGCTTTCAATAGAGAAGAAGCTTCAACTAAAGACTTTGATGAATTAAACAA
TACTTTATATAAATCAGCTTGGAAATCTCAATTCTTATCAGGTATGATGATGCCAATTATGTCTTTTGTAGGAAACTTAG
GATATGTTTTAGTTTCAATACTTGGTGGATGGTTAACAATTAAAAGTGTTATAACTGTTGGGGATATACAAGCATTTATC
CAATATGTACGTTCATTTAATCAACCAATAGCTCAGATGGCTCAGGTTGCAAATATAATGCAATCAACAGCAGCGGCTGC
TGAGAGAGTATTTGAATTCTTAGATGAAAAGGATGAGGTTAAAGATCCAGTTAATTCAGTAGATCCTTCAGAAATAAGAG
GAGAAGTTGAATTTGAAGATGTTCACTTTGGATATAACCCAGATAAGATAATAATAAATGATTTCTCAGTAGATGTTAAA
CCAGGGCAAAAGGTGGCTATTGTTGGACCTACAGGAGCAGGTAAAACTACAATAGTTAAATTATTAATGAGATTCTACGA
TATAAATAGTGGAAGCATTAAGATTGATGGTCATGATATAAGAGACTTTAAGCGTGCTGATTTACGTAACTTATTTGGTA
TGGTTCTTCAAGATACATGGTTATTTAATGGAACTATAATGGAGAATTTACGTTATGGAAGACTAGATTCAACTGATGCT
GAAGTTAAAGAAGCTGCTAAGGCGGCTCATGTTGATCATTTCGTAAAAACTTTACCAGATGGATATAATATGGTCTTAAA
TGAAGAAGCAAGTAATATATCACAAGGACAAAAGCAGCTTTTAACAATTGCTAGAGCTTTCTTAAAAGATCCTAAGCTAT
TAATACTTGATGAGGCTACAAGTTCAGTTGATACTCGTACAGAGCTTTTAATACAAAAAGCCATGGAAAAACTTATGGAA
GGAAGAACAAGCTTTATTATAGCCCACAGACTTTCTACTATACGTGATGCAGACTTAATCCTTGTTATGAAGGATGGAGA
TATAGTTGAACAAGGAAATCATGAAGAGCTTCTAGAAAAAGGTGGATTCTATTCAAGTCTTTACAATAGCCAATTTGAAC
AAAGTAGTGCTTCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(393-541)

ABC transporter transmembrane region (ABC_membrane)

(48-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127EFL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.934

95.307

0.485