Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   ACFELM_RS27520 Genome accession   NZ_CP172852
Coordinates   5898382..5898906 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain 238636E_ID015     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5893382..5903906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFELM_RS27505 (ACFELM_27505) aroB 5894510..5895616 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  ACFELM_RS27510 (ACFELM_27510) aroK 5895666..5896184 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ACFELM_RS27515 (ACFELM_27515) pilQ 5896196..5898328 (-) 2133 WP_003116137.1 type 4a pilus secretin PilQ Machinery gene
  ACFELM_RS27520 (ACFELM_27520) comL/pilP 5898382..5898906 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ACFELM_RS27525 (ACFELM_27525) pilO 5898903..5899526 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACFELM_RS27530 (ACFELM_27530) pilN 5899523..5900119 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  ACFELM_RS27535 (ACFELM_27535) pilM 5900119..5901183 (-) 1065 WP_023103573.1 type IV pilus assembly protein PilM Machinery gene
  ACFELM_RS27540 (ACFELM_27540) - 5901368..5903839 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=954965 ACFELM_RS27520 WP_003116136.1 5898382..5898906(-) (comL/pilP) [Pseudomonas aeruginosa strain 238636E_ID015]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=954965 ACFELM_RS27520 WP_003116136.1 5898382..5898906(-) (comL/pilP) [Pseudomonas aeruginosa strain 238636E_ID015]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAT
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362