Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   ACFELB_RS28130 Genome accession   NZ_CP172850
Coordinates   6049945..6050469 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 238638E_ID017     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6044945..6055469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFELB_RS28115 (ACFELB_28115) aroB 6046061..6047167 (-) 1107 WP_003112148.1 3-dehydroquinate synthase -
  ACFELB_RS28120 (ACFELB_28120) aroK 6047217..6047735 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ACFELB_RS28125 (ACFELB_28125) pilQ 6047747..6049891 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  ACFELB_RS28130 (ACFELB_28130) comL/pilP 6049945..6050469 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ACFELB_RS28135 (ACFELB_28135) pilO 6050466..6051089 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACFELB_RS28140 (ACFELB_28140) pilN 6051086..6051682 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  ACFELB_RS28145 (ACFELB_28145) pilM 6051682..6052746 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  ACFELB_RS28150 (ACFELB_28150) - 6052931..6055402 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=954763 ACFELB_RS28130 WP_003095836.1 6049945..6050469(-) (comL/pilP) [Pseudomonas aeruginosa strain 238638E_ID017]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=954763 ACFELB_RS28130 WP_003095836.1 6049945..6050469(-) (comL/pilP) [Pseudomonas aeruginosa strain 238638E_ID017]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362