Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ACHGMI_RS09710 Genome accession   NZ_CP172417
Coordinates   1780942..1781391 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain AKPS2     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1775942..1786391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS09670 ctaE 1775958..1776581 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  ACHGMI_RS09675 ctaF 1776584..1776916 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  ACHGMI_RS09680 ctaG 1776944..1777837 (+) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  ACHGMI_RS09685 ylbA 1777869..1778231 (-) 363 WP_014479712.1 YugN family protein -
  ACHGMI_RS09690 ylbB 1778371..1778817 (+) 447 WP_003221362.1 CBS domain-containing protein -
  ACHGMI_RS09695 ylbC 1778901..1779941 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  ACHGMI_RS09700 ylbD 1780173..1780571 (+) 399 WP_003232233.1 YlbD family protein -
  ACHGMI_RS09705 ylbE 1780587..1780826 (+) 240 WP_003232231.1 YlbE-like family protein -
  ACHGMI_RS09710 ylbF 1780942..1781391 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ACHGMI_RS09715 ylbG 1781446..1781718 (+) 273 WP_009967171.1 YlbG family protein -
  ACHGMI_RS09720 rsmD 1782041..1782595 (+) 555 WP_017694816.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACHGMI_RS09725 coaD 1782600..1783085 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ACHGMI_RS09730 spoVV 1783096..1784322 (-) 1227 WP_017694817.1 dipicolinic acid transporter SpoVV -
  ACHGMI_RS09735 ylbK 1784503..1785285 (+) 783 WP_017694818.1 patatin family protein -
  ACHGMI_RS09740 sepM 1785287..1786312 (+) 1026 WP_014476730.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=953683 ACHGMI_RS09710 WP_003221370.1 1780942..1781391(+) (ylbF) [Bacillus subtilis strain AKPS2]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=953683 ACHGMI_RS09710 WP_003221370.1 1780942..1781391(+) (ylbF) [Bacillus subtilis strain AKPS2]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAATTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTCTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1