Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   ACHGMI_RS03605 Genome accession   NZ_CP172417
Coordinates   683196..683474 (-) Length   92 a.a.
NCBI ID   WP_026113660.1    Uniprot ID   -
Organism   Bacillus subtilis strain AKPS2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 678196..688474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS03585 pleJ 678351..680522 (+) 2172 WP_017695975.1 MMPL family transporter -
  ACHGMI_RS03590 ydfK 680580..681269 (-) 690 WP_017695976.1 DUF554 domain-containing protein -
  ACHGMI_RS03595 ydfL 681359..682171 (-) 813 WP_003234177.1 MerR family transcriptional regulator -
  ACHGMI_RS03600 - 682734..683057 (-) 324 WP_017695977.1 hypothetical protein -
  ACHGMI_RS03605 rapF 683196..683474 (-) 279 WP_026113660.1 hypothetical protein Regulator
  ACHGMI_RS03610 - 683916..684641 (+) 726 WP_017695978.1 hypothetical protein -
  ACHGMI_RS03615 - 684907..686148 (-) 1242 Protein_666 transposase -
  ACHGMI_RS03620 mneP 686275..687168 (-) 894 WP_017695981.1 manganese transporter MneP -
  ACHGMI_RS03625 ydfN 687644..688264 (+) 621 WP_017695982.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 11264.99 Da        Isoelectric Point: 4.8550

>NTDB_id=953643 ACHGMI_RS03605 WP_026113660.1 683196..683474(-) (rapF) [Bacillus subtilis strain AKPS2]
MRDEVKEEIELMKENQDAVVYYQLLKFRHELMLDYLHPDNVRDIEKQYEKLRELKNNNQNLTGMLEYYFYFFMGCTISGS
MNWLLIKLLQTS

Nucleotide


Download         Length: 279 bp        

>NTDB_id=953643 ACHGMI_RS03605 WP_026113660.1 683196..683474(-) (rapF) [Bacillus subtilis strain AKPS2]
ATGAGGGATGAAGTTAAGGAAGAAATCGAGCTAATGAAGGAAAACCAAGACGCCGTCGTTTACTACCAACTATTAAAATT
CCGTCATGAATTAATGTTGGACTATCTCCATCCTGACAATGTCAGAGATATAGAGAAACAGTATGAAAAGCTAAGAGAAC
TGAAAAATAACAATCAGAACCTCACAGGAATGTTAGAATACTATTTTTATTTTTTTATGGGATGTACTATTTCAGGCAGC
ATGAACTGGCTTCTAATTAAACTGTTACAGACAAGCTGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(1-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

46.753

83.696

0.391