Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   WHP50_RS06470 Genome accession   NZ_CP148264
Coordinates   1263754..1264269 (-) Length   171 a.a.
NCBI ID   WP_002898664.1    Uniprot ID   A0A5Y8XKJ8
Organism   Campylobacter jejuni strain Z1322HCJ0003     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1258754..1269269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP50_RS06455 (WHP50_06455) - 1258867..1260684 (-) 1818 WP_338910892.1 motility associated factor glycosyltransferase family protein -
  WHP50_RS06460 (WHP50_06460) - 1260681..1262504 (-) 1824 WP_093958678.1 motility associated factor glycosyltransferase family protein -
  WHP50_RS06465 (WHP50_06465) - 1262514..1263754 (-) 1241 Protein_1252 DUF2920 family protein -
  WHP50_RS06470 (WHP50_06470) ctsG 1263754..1264269 (-) 516 WP_002898664.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHP50_RS06475 (WHP50_06475) tsaD 1264270..1265277 (-) 1008 WP_002898666.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  WHP50_RS06480 (WHP50_06480) - 1265274..1266668 (-) 1395 WP_038813975.1 M99 family carboxypeptidase catalytic domain-containing protein -
  WHP50_RS06485 (WHP50_06485) dxr 1266670..1267740 (-) 1071 WP_032583833.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  WHP50_RS06490 (WHP50_06490) cdsA 1267737..1268462 (-) 726 WP_002889945.1 phosphatidate cytidylyltransferase -
  WHP50_RS06495 (WHP50_06495) - 1268471..1268809 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18734.63 Da        Isoelectric Point: 6.4683

>NTDB_id=953627 WHP50_RS06470 WP_002898664.1 1263754..1264269(-) (ctsG) [Campylobacter jejuni strain Z1322HCJ0003]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNVIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=953627 WHP50_RS06470 WP_002898664.1 1263754..1264269(-) (ctsG) [Campylobacter jejuni strain Z1322HCJ0003]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATCTTAGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGTTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y8XKJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942