Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACGH2B_RS04870 Genome accession   NZ_CP172415
Coordinates   1406422..1407483 (+) Length   353 a.a.
NCBI ID   WP_399084616.1    Uniprot ID   -
Organism   Streptomyces sp. BBFR2     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1401422..1412483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGH2B_RS04855 (ACGH2B_04855) - 1403184..1404002 (-) 819 WP_399084607.1 carbohydrate ABC transporter permease -
  ACGH2B_RS04860 (ACGH2B_04860) - 1404002..1404949 (-) 948 WP_399084610.1 carbohydrate ABC transporter permease -
  ACGH2B_RS04865 (ACGH2B_04865) - 1404967..1406271 (-) 1305 WP_399084613.1 ABC transporter substrate-binding protein -
  ACGH2B_RS04870 (ACGH2B_04870) cytR 1406422..1407483 (+) 1062 WP_399084616.1 LacI family DNA-binding transcriptional regulator Regulator
  ACGH2B_RS04875 (ACGH2B_04875) - 1407648..1408907 (-) 1260 WP_399084619.1 ROK family protein -
  ACGH2B_RS04880 (ACGH2B_04880) xylA 1408995..1410164 (-) 1170 WP_399084622.1 xylose isomerase -
  ACGH2B_RS04885 (ACGH2B_04885) xylB 1410368..1411867 (+) 1500 WP_399084625.1 xylulokinase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37930.18 Da        Isoelectric Point: 6.3468

>NTDB_id=953557 ACGH2B_RS04870 WP_399084616.1 1406422..1407483(+) (cytR) [Streptomyces sp. BBFR2]
MRDDEENRRITLAEVAQKAGVSLSTVSKVLNGRQDVSPRTRSKVESLLEAHSYRRTTRAAGEAPLIELVFHELDSVWSME
LIRGVENLAKAHHASVVLTESGTRHAPAADWIEGVLQRRPIGVVLVFSSLPDEVKQQLGSRSIPFVIVDPAGDPEPDVPS
VGSANWSGGVAATRHLVDLGHRRIGIITGPEDVLCSLARLDGYRSALGMAGVPVDPALIRFGDFHVEGGYARALELLRLP
DRPTAVFAGSDLQALGVLEAARVCGLRVPEDLSVVGYDDVVIARWSSPALTTVHQPLRQMGEEAAQMLLRLRAGEHSVTR
LELATSLVVRNSTAPPPEKPAPASSPPSARDAV

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=953557 ACGH2B_RS04870 WP_399084616.1 1406422..1407483(+) (cytR) [Streptomyces sp. BBFR2]
ATGCGCGATGACGAGGAGAACAGGCGGATCACCCTGGCTGAGGTGGCTCAGAAGGCCGGGGTGTCACTTTCGACAGTTTC
GAAAGTTCTCAACGGACGGCAGGACGTCTCGCCCCGCACCCGGAGCAAGGTGGAGTCGCTGCTGGAGGCGCACTCGTACC
GCAGGACCACCCGCGCGGCCGGCGAAGCGCCCCTGATCGAGCTCGTCTTCCACGAACTCGACAGCGTCTGGTCCATGGAG
CTGATCCGGGGCGTGGAGAACCTCGCCAAGGCCCACCACGCCAGCGTGGTCCTCACGGAGAGCGGCACCCGGCACGCCCC
GGCGGCCGACTGGATCGAGGGCGTGCTGCAGCGCCGCCCGATCGGCGTCGTGCTCGTCTTCTCCTCGCTCCCCGACGAGG
TCAAGCAGCAGTTGGGGTCCCGCTCCATCCCGTTCGTCATCGTCGATCCGGCGGGTGACCCGGAACCCGACGTGCCCTCC
GTGGGCTCGGCGAACTGGTCCGGTGGCGTCGCCGCCACCCGCCACCTCGTCGACCTCGGACACCGCCGCATCGGCATCAT
CACGGGCCCGGAAGACGTCCTGTGCTCCCTCGCGCGCCTCGACGGCTACCGCTCGGCCCTCGGCATGGCCGGGGTCCCCG
TCGATCCGGCCCTGATCCGCTTCGGCGACTTCCACGTCGAGGGCGGCTACGCACGCGCTCTGGAACTGCTGCGCCTGCCG
GACCGGCCCACGGCGGTCTTCGCCGGAAGCGACCTCCAGGCGCTCGGCGTCCTGGAGGCCGCCCGGGTCTGCGGACTACG
CGTCCCCGAGGACCTGTCCGTGGTCGGGTACGACGACGTCGTGATCGCCCGCTGGTCGAGCCCGGCCCTCACCACCGTCC
ACCAGCCGCTCCGTCAGATGGGCGAGGAGGCCGCGCAGATGCTGCTGCGCCTGCGCGCCGGGGAGCACTCGGTGACCCGC
CTGGAGCTCGCGACCAGCCTCGTCGTCAGGAACAGCACGGCCCCGCCGCCCGAGAAGCCGGCGCCGGCCTCGTCCCCGCC
CTCCGCCCGCGACGCGGTCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(173-333)

Bacterial regulatory proteins, lacI family (LacI)

(11-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.87

95.751

0.363