Detailed information NTG0953394

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: ACHZDB_RS00225
• Genome accession: NZ_CP172405
• Coordinates: 61119..62474 (+)
• Length: 451 a.a.
• NCBI ID: WP_038889531.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain LB503
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 56119..67474

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHZDB_RS00210 (ACHZDB_00210)	lrp	56445..56939 (+)	495	WP_005528862.1	leucine-responsive transcriptional regulator Lrp	-
ACHZDB_RS00215 (ACHZDB_00215)	-	57092..60430 (+)	3339	WP_399424563.1	DNA translocase FtsK 4TM domain-containing protein	-
ACHZDB_RS00220 (ACHZDB_00220)	lolA	60492..61118 (+)	627	WP_005431005.1	outer membrane lipoprotein chaperone LolA	-
ACHZDB_RS00225 (ACHZDB_00225)	rarA	61119..62474 (+)	1356	WP_038889531.1	replication-associated recombination protein A	Machinery gene
ACHZDB_RS00230 (ACHZDB_00230)	serS	62567..63874 (+)	1308	WP_045378081.1	serine--tRNA ligase	-
ACHZDB_RS00235 (ACHZDB_00235)	-	64071..64337 (+)	267	WP_399424566.1	DksA/TraR family C4-type zinc finger protein	-
ACHZDB_RS00240 (ACHZDB_00240)	bioA	64475..65752 (-)	1278	WP_077200895.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-
ACHZDB_RS00245 (ACHZDB_00245)	bioB	65883..66935 (+)	1053	WP_005378222.1	biotin synthase BioB	-

Sequence

Protein

• Length: 451 a.a.
• Molecular weight: 50002.42 Da
• Isoelectric Point: 5.5038

>NTDB_id=953394 ACHZDB_RS00225 WP_038889531.1 61119..62474(+) (rarA) [Vibrio campbellii strain LB503]
MVVSNYTLDFSGDEDFRPLAARMRPETIEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAE
VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRA
RVYKLTSLDKDEISLALNQAISDKERGLGNTPAHFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLL
AEVAGEKVSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSA
WDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPG
AYAAGEQYLPPEMGDRRYYQPTNRGLETKIGEKLDYLATLDANSPQKRYEK

Nucleotide

• Length: 1356 bp

>NTDB_id=953394 ACHZDB_RS00225 WP_038889531.1 61119..62474(+) (rarA) [Vibrio campbellii strain LB503]
TTGGTAGTGAGCAATTACACATTAGATTTCTCGGGGGACGAAGATTTTCGTCCCCTTGCTGCTCGTATGAGACCGGAAAC
GATTGAACAGTACATCGGTCAGCAGCATATTTTAGGTCCTGGTAAGCCACTACGCCGTGCGTTAGAGGCTGGTCATATTC
ACTCTATGATCCTTTGGGGACCGCCAGGCACAGGTAAGACGACGTTGGCAGAAGTGGCGGCAAACTATGCCAATGCAGAA
GTTGAGCGTGTGTCTGCAGTGACGTCTGGCGTGAAAGAAATTCGTGCTGCAATCGAGAAAGCGCGTGAGAATAAAATGGC
GGGTCGCCGCACCATCTTATTTGTGGATGAGGTGCATCGCTTCAACAAATCTCAACAAGACGCGTTTTTACCGCATATCG
AAGATGGCACCGTTACCTTTATTGGTGCGACGACAGAAAACCCATCGTTTGAGTTAAACAACGCATTGCTGTCACGTGCA
CGTGTGTACAAGTTAACGTCTCTCGATAAAGACGAAATCTCACTAGCGTTGAACCAAGCCATTAGCGATAAAGAGCGTGG
GCTGGGTAATACACCTGCACACTTCGCTGATAACGTATTAGATCGCCTAGCAGAACTGGTAAACGGTGATGCACGCATGT
CTCTCAACTATCTTGAGCTGCTATACGACATGGCAGAAGACAATGCACAAGGTGAAAAAGAGATCACACTTAAGTTGCTT
GCGGAAGTAGCAGGGGAGAAAGTCTCTCGCTTCGATAACAAAGGTGATATCTGGTACGACTTAATCTCTGCTGTACACAA
GTCGATTCGTGGTTCTAACCCTGATGCCGCGCTTTACTGGGCTGCACGTATGATCGCAGCAGGTTGCGACCCTTTGTACA
TTGCTCGCCGCCTACTGGCGATTGCCTCTGAAGATGTGGGCAATGCGGACCCTCGTGCAATGCAAGTGGCACTTTCCGCT
TGGGATTGCTTTACCCGTGTTGGCCCGGCAGAAGGTGAACGTGCGATTGCACAAGCGATCGTGTACTTAGCATGTGCACC
AAAAAGTAATGCGGTATACGTGGCGTGGAAGCAAGCGCTCACAGATGCTCATAACTTGCCTGAATATGAAGTGCCGCATC
ACCTTCGAAATGCACCGACCAGTTTGATGAAAGACATGGGTTATGGGGCAGAGTATCGTTACGCGCACGATGAGCCTGGC
GCTTACGCCGCAGGTGAGCAATATTTGCCGCCTGAAATGGGTGATCGTAGGTACTATCAGCCGACAAATCGTGGTCTAGA
GACCAAAATCGGCGAAAAGTTAGATTACTTGGCTACTTTAGACGCAAATAGCCCACAAAAGCGCTATGAAAAGTAG

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (191-270)

• ATPase family associated with various cellular activities (AAA) (AAA) (56-161)

• MgsA AAA+ ATPase C terminal (MgsA_C) (271-437)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.48	93.792	0.37