Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   WHP38_RS02110 Genome accession   NZ_CP148240
Coordinates   398864..399379 (+) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni strain Z1323CCJ0011     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 393864..404379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP38_RS02085 (WHP38_02085) - 394324..394662 (+) 339 WP_002852397.1 hypothetical protein -
  WHP38_RS02090 (WHP38_02090) cdsA 394671..395396 (+) 726 WP_002869557.1 phosphatidate cytidylyltransferase -
  WHP38_RS02095 (WHP38_02095) dxr 395393..396463 (+) 1071 WP_002864243.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  WHP38_RS02100 (WHP38_02100) - 396465..397859 (+) 1395 WP_002869556.1 M99 family carboxypeptidase catalytic domain-containing protein -
  WHP38_RS02105 (WHP38_02105) tsaD 397856..398863 (+) 1008 WP_002864246.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  WHP38_RS02110 (WHP38_02110) ctsG 398864..399379 (+) 516 WP_002799196.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHP38_RS02115 (WHP38_02115) - 399379..400620 (+) 1242 WP_002905941.1 DUF2920 family protein -
  WHP38_RS02120 (WHP38_02120) - 400632..402452 (+) 1821 WP_338878162.1 motility associated factor glycosyltransferase family protein -
  WHP38_RS02125 (WHP38_02125) - 402452..404269 (+) 1818 WP_338877574.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=953292 WHP38_RS02110 WP_002799196.1 398864..399379(+) (ctsG) [Campylobacter jejuni strain Z1323CCJ0011]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=953292 WHP38_RS02110 WP_002799196.1 398864..399379(+) (ctsG) [Campylobacter jejuni strain Z1323CCJ0011]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942