Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   WHP64_RS07375 Genome accession   NZ_CP148218
Coordinates   1441400..1441915 (-) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni strain Z1323CCJ0055     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1436400..1446915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP64_RS07360 (WHP64_07360) - 1436512..1438329 (-) 1818 WP_338900783.1 motility associated factor glycosyltransferase family protein -
  WHP64_RS07365 (WHP64_07365) - 1438326..1440149 (-) 1824 WP_338878114.1 motility associated factor glycosyltransferase family protein -
  WHP64_RS07370 (WHP64_07370) - 1440159..1441400 (-) 1242 WP_338878115.1 DUF2920 family protein -
  WHP64_RS07375 (WHP64_07375) ctsG 1441400..1441915 (-) 516 WP_002799196.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHP64_RS07380 (WHP64_07380) tsaD 1441916..1442923 (-) 1008 WP_002864246.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  WHP64_RS07385 (WHP64_07385) - 1442920..1444314 (-) 1395 WP_002873626.1 M99 family carboxypeptidase catalytic domain-containing protein -
  WHP64_RS07390 (WHP64_07390) dxr 1444316..1445386 (-) 1071 WP_041160209.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  WHP64_RS07395 (WHP64_07395) cdsA 1445383..1446108 (-) 726 WP_032586801.1 phosphatidate cytidylyltransferase -
  WHP64_RS07400 (WHP64_07400) - 1446117..1446455 (-) 339 WP_338878116.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=952860 WHP64_RS07375 WP_002799196.1 1441400..1441915(-) (ctsG) [Campylobacter jejuni strain Z1323CCJ0055]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=952860 WHP64_RS07375 WP_002799196.1 1441400..1441915(-) (ctsG) [Campylobacter jejuni strain Z1323CCJ0055]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942