Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   WHP58_RS09110 Genome accession   NZ_CP148206
Coordinates   1720424..1720939 (+) Length   171 a.a.
NCBI ID   WP_002903863.1    Uniprot ID   A0AB36G830
Organism   Campylobacter jejuni strain Z1323CCJ0066     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1715424..1725939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP58_RS09085 (WHP58_09085) - 1715884..1716222 (+) 339 WP_002852397.1 hypothetical protein -
  WHP58_RS09090 (WHP58_09090) cdsA 1716231..1716956 (+) 726 WP_002889945.1 phosphatidate cytidylyltransferase -
  WHP58_RS09095 (WHP58_09095) dxr 1716953..1718023 (+) 1071 WP_002864243.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  WHP58_RS09100 (WHP58_09100) - 1718025..1719419 (+) 1395 WP_002869556.1 M99 family carboxypeptidase catalytic domain-containing protein -
  WHP58_RS09105 (WHP58_09105) tsaD 1719416..1720423 (+) 1008 WP_002889944.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  WHP58_RS09110 (WHP58_09110) ctsG 1720424..1720939 (+) 516 WP_002903863.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHP58_RS09115 (WHP58_09115) - 1720939..1722188 (+) 1250 Protein_1766 DUF2920 family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18734.63 Da        Isoelectric Point: 7.2439

>NTDB_id=952705 WHP58_RS09110 WP_002903863.1 1720424..1720939(+) (ctsG) [Campylobacter jejuni strain Z1323CCJ0066]
MKKAFTILELVFVIVILGILAAIALPKMSSSKHEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYFLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=952705 WHP58_RS09110 WP_002903863.1 1720424..1720939(+) (ctsG) [Campylobacter jejuni strain Z1323CCJ0066]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGCATGAAGCCGAGGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTGAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATTTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93