Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   WHP85_RS00095 Genome accession   NZ_CP148197
Coordinates   15280..15888 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain Z1323CCJ0073     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 10280..20888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP85_RS00070 (WHP85_00070) - 10437..11201 (+) 765 WP_002851318.1 TIGR02757 family protein -
  WHP85_RS00075 (WHP85_00075) - 11205..11969 (+) 765 WP_002851426.1 TSUP family transporter -
  WHP85_RS00080 (WHP85_00080) ctsF 11962..13143 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  WHP85_RS00085 (WHP85_00085) ctsE 13140..14699 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  WHP85_RS00090 (WHP85_00090) ctsX 14689..15276 (-) 588 WP_002851370.1 membrane protein Machinery gene
  WHP85_RS00095 (WHP85_00095) ctsP 15280..15888 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP85_RS00100 (WHP85_00100) ctsD 15881..17293 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP85_RS00105 (WHP85_00105) ctsR 17271..17582 (-) 312 WP_015016496.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=952573 WHP85_RS00095 WP_002851464.1 15280..15888(-) (ctsP) [Campylobacter jejuni strain Z1323CCJ0073]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=952573 WHP85_RS00095 WP_002851464.1 15280..15888(-) (ctsP) [Campylobacter jejuni strain Z1323CCJ0073]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995