Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   AAA985_RS07345 Genome accession   NZ_AP028603
Coordinates   1421610..1422332 (-) Length   240 a.a.
NCBI ID   WP_001010371.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Pne2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 1416610..1427332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA985_RS07335 (TKY181970_14580) - 1419184..1420350 (-) 1167 WP_000521384.1 MalY/PatB family protein -
  AAA985_RS07340 (TKY181970_14590) - 1420358..1421452 (-) 1095 WP_000031964.1 cystathionine gamma-synthase -
  AAA985_RS07345 rcrP 1421610..1422332 (-) 723 WP_001010371.1 ATP-binding cassette domain-containing protein Regulator
  AAA985_RS07350 - 1422519..1423040 (-) 522 Protein_1454 ABC transporter transmembrane domain-containing protein -
  AAA985_RS07355 (TKY181970_14610) - 1423058..1423291 (-) 234 WP_000769000.1 hypothetical protein -
  AAA985_RS07360 (TKY181970_14620) amiA3 1423463..1425424 (-) 1962 WP_000748866.1 peptide ABC transporter substrate-binding protein Regulator
  AAA985_RS07365 (TKY181970_14630) - 1425625..1427247 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -

Sequence


Protein


Download         Length: 240 a.a.        Molecular weight: 27132.92 Da        Isoelectric Point: 4.9157

>NTDB_id=95253 AAA985_RS07345 WP_001010371.1 1421610..1422332(-) (rcrP) [Streptococcus pneumoniae strain Pne2]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHSLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=95253 AAA985_RS07345 WP_001010371.1 1421610..1422332(-) (rcrP) [Streptococcus pneumoniae strain Pne2]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATAGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains


Predicted by InterProScan.

(17-167)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363


Multiple sequence alignment