Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   WHP72_RS07160 Genome accession   NZ_CP148184
Coordinates   1371494..1372009 (-) Length   171 a.a.
NCBI ID   WP_002867318.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0088     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1366494..1377009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP72_RS07145 (WHP72_07145) - 1366597..1368414 (-) 1818 WP_338877855.1 motility associated factor glycosyltransferase family protein -
  WHP72_RS07150 (WHP72_07150) - 1368411..1370243 (-) 1833 WP_338877856.1 motility associated factor glycosyltransferase family protein -
  WHP72_RS07155 (WHP72_07155) - 1370253..1371494 (-) 1242 WP_044260698.1 DUF2920 family protein -
  WHP72_RS07160 (WHP72_07160) ctsG 1371494..1372009 (-) 516 WP_002867318.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHP72_RS07165 (WHP72_07165) tsaD 1372010..1373017 (-) 1008 WP_002867317.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  WHP72_RS07170 (WHP72_07170) - 1373014..1374408 (-) 1395 WP_002867316.1 M99 family carboxypeptidase catalytic domain-containing protein -
  WHP72_RS07175 (WHP72_07175) dxr 1374410..1375480 (-) 1071 WP_002867315.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  WHP72_RS07180 (WHP72_07180) cdsA 1375477..1376202 (-) 726 WP_063668013.1 phosphatidate cytidylyltransferase -
  WHP72_RS07185 (WHP72_07185) - 1376211..1376549 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18706.57 Da        Isoelectric Point: 6.4683

>NTDB_id=952424 WHP72_RS07160 WP_002867318.1 1371494..1372009(-) (ctsG) [Campylobacter jejuni strain Z1323CCJ0088]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=952424 WHP72_RS07160 WP_002867318.1 1371494..1372009(-) (ctsG) [Campylobacter jejuni strain Z1323CCJ0088]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.737

100

0.947