Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   QML87_RS08535 Genome accession   NZ_AP025936
Coordinates   1686743..1687564 (-) Length   273 a.a.
NCBI ID   WP_000601678.1    Uniprot ID   A0A6I3U1Q8
Organism   Streptococcus pneumoniae strain PZ900700617     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 1681743..1692564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML87_RS08490 (PC0607_16710) - 1682235..1682552 (-) 318 WP_000615776.1 thioredoxin family protein -
  QML87_RS08495 (PC0607_16720) - 1682549..1682848 (-) 300 WP_001818001.1 DUF4651 domain-containing protein -
  QML87_RS08500 - 1682942..1683073 (+) 132 WP_001811306.1 hypothetical protein -
  QML87_RS08505 (PC0607_16730) - 1683098..1683295 (-) 198 Protein_1671 N-acetylmuramoyl-L-alanine amidase family protein -
  QML87_RS08510 (PC0607_16740) - 1683537..1684211 (-) 675 WP_000725750.1 membrane protein -
  QML87_RS08515 (PC0607_16750) - 1684217..1684663 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  QML87_RS08520 - 1684777..1685280 (-) 504 WP_000800942.1 phosphatase PAP2 family protein -
  QML87_RS08525 (PC0607_16760) - 1685277..1685639 (-) 363 WP_000078804.1 DUF2200 family protein -
  QML87_RS08530 (PC0607_16770) rcrQ 1685705..1686736 (-) 1032 WP_000506427.1 ATP-binding cassette domain-containing protein Regulator
  QML87_RS08535 (PC0607_16780) rcrP 1686743..1687564 (-) 822 WP_000601678.1 ABC transporter permease Regulator
  QML87_RS08540 (PC0607_16790) - 1687581..1688052 (-) 472 Protein_1678 MarR family winged helix-turn-helix transcriptional regulator -
  QML87_RS08545 (PC0607_16800) - 1688176..1688892 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QML87_RS08550 (PC0607_16810) ply 1689773..1691188 (-) 1416 WP_001284359.1 cholesterol-dependent cytolysin pneumolysin -
  QML87_RS08555 (PC0607_16820) - 1691199..1691609 (-) 411 WP_000595757.1 hypothetical protein -
  QML87_RS08560 (PC0607_16830) - 1691602..1692210 (-) 609 WP_000083614.1 hypothetical protein -

Sequence


Protein


Download         Length: 273 a.a.        Molecular weight: 30614.21 Da        Isoelectric Point: 5.9310

>NTDB_id=95222 QML87_RS08535 WP_000601678.1 1686743..1687564(-) (rcrP) [Streptococcus pneumoniae strain PZ900700617]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQETNLDELWQPASMMMGMSFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGPIMAIWAIGKILGHSEYWLWAVLVVVIVNVLMTTV
LMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIIFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=95222 QML87_RS08535 WP_000601678.1 1686743..1687564(-) (rcrP) [Streptococcus pneumoniae strain PZ900700617]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGAAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGTCCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGCGTGGTCCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGTAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGTTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTA
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTAT
TTTCATGTCTTATGCCATGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A6I3U1Q8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

57.193

100

0.597


Multiple sequence alignment