Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   WHP83_RS03935 Genome accession   NZ_CP148154
Coordinates   746809..747324 (+) Length   171 a.a.
NCBI ID   WP_002868456.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323HCJ0086     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 741809..752324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP83_RS03910 (WHP83_03910) - 742269..742607 (+) 339 WP_002875268.1 hypothetical protein -
  WHP83_RS03915 (WHP83_03915) cdsA 742616..743341 (+) 726 WP_002884177.1 phosphatidate cytidylyltransferase -
  WHP83_RS03920 (WHP83_03920) dxr 743338..744408 (+) 1071 WP_234729012.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  WHP83_RS03925 (WHP83_03925) - 744410..745804 (+) 1395 WP_002853606.1 M99 family carboxypeptidase catalytic domain-containing protein -
  WHP83_RS03930 (WHP83_03930) tsaD 745801..746808 (+) 1008 WP_002884179.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  WHP83_RS03935 (WHP83_03935) ctsG 746809..747324 (+) 516 WP_002868456.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHP83_RS03940 (WHP83_03940) - 747324..748560 (+) 1237 Protein_759 DUF2920 family protein -
  WHP83_RS03945 (WHP83_03945) - 748577..750400 (+) 1824 WP_275054940.1 motility associated factor glycosyltransferase family protein -
  WHP83_RS03950 (WHP83_03950) - 750397..752214 (+) 1818 WP_338851160.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18704.64 Da        Isoelectric Point: 6.4682

>NTDB_id=951847 WHP83_RS03935 WP_002868456.1 746809..747324(+) (ctsG) [Campylobacter jejuni strain Z1323HCJ0086]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGILSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=951847 WHP83_RS03935 WP_002868456.1 746809..747324(+) (ctsG) [Campylobacter jejuni strain Z1323HCJ0086]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGTGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTTAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936