Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   WHQ49_RS06685 Genome accession   NZ_CP148147
Coordinates   1288680..1289195 (-) Length   171 a.a.
NCBI ID   WP_002875972.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323PCJ0008     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1283680..1294195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ49_RS06670 (WHQ49_06670) - 1283802..1285610 (-) 1809 WP_338842182.1 motility associated factor glycosyltransferase family protein -
  WHQ49_RS06675 (WHQ49_06675) - 1285607..1287430 (-) 1824 WP_004297740.1 motility associated factor glycosyltransferase family protein -
  WHQ49_RS06680 (WHQ49_06680) - 1287440..1288680 (-) 1241 Protein_1295 DUF2920 family protein -
  WHQ49_RS06685 (WHQ49_06685) ctsG 1288680..1289195 (-) 516 WP_002875972.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHQ49_RS06690 (WHQ49_06690) tsaD 1289196..1290203 (-) 1008 WP_002864246.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  WHQ49_RS06695 (WHQ49_06695) - 1290200..1291594 (-) 1395 WP_002868458.1 M99 family carboxypeptidase catalytic domain-containing protein -
  WHQ49_RS06700 (WHQ49_06700) dxr 1291596..1292666 (-) 1071 WP_002868459.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  WHQ49_RS06705 (WHQ49_06705) cdsA 1292663..1293388 (-) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  WHQ49_RS06710 (WHQ49_06710) - 1293397..1293735 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18693.49 Da        Isoelectric Point: 5.7789

>NTDB_id=951684 WHQ49_RS06685 WP_002875972.1 1288680..1289195(-) (ctsG) [Campylobacter jejuni strain Z1323PCJ0008]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=951684 WHQ49_RS06685 WP_002875972.1 1288680..1289195(-) (ctsG) [Campylobacter jejuni strain Z1323PCJ0008]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGTAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936