Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   WHO18_RS08850 Genome accession   NZ_CP148128
Coordinates   1689711..1690490 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis isolate FELIX_MS620     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1684711..1695490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO18_RS08830 trmFO 1685404..1686711 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  WHO18_RS08835 xerC 1686779..1687693 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  WHO18_RS08840 clpQ 1687706..1688251 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  WHO18_RS08845 hslU 1688259..1689671 (+) 1413 WP_256683486.1 HslU--HslV peptidase ATPase subunit -
  WHO18_RS08850 codY 1689711..1690490 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  WHO18_RS08855 flgB 1690870..1691259 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  WHO18_RS08860 flgC 1691259..1691711 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  WHO18_RS08865 fliE 1691722..1692042 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  WHO18_RS08870 fliF 1692088..1693698 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  WHO18_RS08875 fliG 1693711..1694727 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  WHO18_RS08880 fliH 1694720..1695472 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=951440 WHO18_RS08850 WP_003220850.1 1689711..1690490(+) (codY) [Bacillus subtilis isolate FELIX_MS620]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=951440 WHO18_RS08850 WP_003220850.1 1689711..1690490(+) (codY) [Bacillus subtilis isolate FELIX_MS620]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467