Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AABA08_RS07770 Genome accession   NZ_AP028602
Coordinates   1552979..1554250 (+) Length   423 a.a.
NCBI ID   WP_001113216.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1547979..1559250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA08_RS07730 (TKY092604_15360) - 1549008..1549481 (-) 474 WP_000631889.1 GNAT family N-acetyltransferase -
  AABA08_RS07735 (TKY092604_15370) - 1549478..1549912 (-) 435 WP_000421871.1 NUDIX hydrolase -
  AABA08_RS07740 (TKY092604_15380) - 1549962..1550504 (-) 543 WP_000891117.1 hypothetical protein -
  AABA08_RS07745 (TKY092604_15390) - 1550560..1551030 (-) 471 WP_000257097.1 DUF3013 family protein -
  AABA08_RS07750 (TKY092604_15400) - 1551321..1551773 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  AABA08_RS07755 (TKY092604_15410) - 1551810..1551989 (-) 180 WP_001132283.1 type II toxin-antitoxin system HicA family toxin -
  AABA08_RS07760 (TKY092604_15420) - 1552126..1552305 (-) 180 WP_001809903.1 hypothetical protein -
  AABA08_RS07765 (TKY092604_15430) - 1552470..1552709 (-) 240 WP_000818079.1 hypothetical protein -
  AABA08_RS07770 (TKY092604_15440) rarA 1552979..1554250 (+) 1272 WP_001113216.1 replication-associated recombination protein A Machinery gene
  AABA08_RS07780 (TKY092604_15450) - 1554670..1555797 (-) 1128 WP_000323402.1 tyrosine-type recombinase/integrase -
  AABA08_RS07785 (TKY092604_15460) - 1555799..1555981 (-) 183 WP_000785802.1 DUF3173 domain-containing protein -
  AABA08_RS07790 (TKY092604_15470) - 1555985..1557004 (-) 1020 WP_001099065.1 replication initiation factor domain-containing protein -
  AABA08_RS07795 (TKY092604_15480) - 1557009..1557428 (-) 420 WP_000262969.1 hypothetical protein -
  AABA08_RS07800 (TKY092604_15490) - 1557684..1559075 (-) 1392 WP_001242575.1 FtsK/SpoIIIE domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 47027.47 Da        Isoelectric Point: 5.9471

>NTDB_id=95144 AABA08_RS07770 WP_001113216.1 1552979..1554250(+) (rarA) [Streptococcus pneumoniae strain PF2]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYTARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=95144 AABA08_RS07770 WP_001113216.1 1552979..1554250(+) (rarA) [Streptococcus pneumoniae strain PF2]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATTCGTGGCTCAGATGTGGATGCCAGTCTCCACTATACTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCACAAAGGATTGGTTTCCCCGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.757

99.054

0.572

Multiple sequence alignment