Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AABA08_RS06880 Genome accession   NZ_AP028602
Coordinates   1377675..1378463 (-) Length   262 a.a.
NCBI ID   WP_000940838.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF2     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1372675..1383463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA08_RS06850 (TKY092604_13560) - 1373662..1374174 (-) 513 WP_001049323.1 adenine phosphoribosyltransferase -
  AABA08_RS06855 (TKY092604_13570) - 1374261..1375019 (-) 759 WP_001287230.1 class I SAM-dependent methyltransferase -
  AABA08_RS06860 - 1375227..1375373 (+) 147 WP_000403100.1 hypothetical protein -
  AABA08_RS06865 (TKY092604_13580) - 1375520..1376650 (-) 1131 WP_000229961.1 ABC transporter ATP-binding protein -
  AABA08_RS06875 (TKY092604_13590) - 1377100..1377675 (-) 576 WP_000158722.1 cysteine hydrolase family protein -
  AABA08_RS06880 (TKY092604_13600) codY 1377675..1378463 (-) 789 WP_000940838.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AABA08_RS06885 (TKY092604_13610) - 1378727..1380286 (-) 1560 WP_000671111.1 DEAD/DEAH box helicase -
  AABA08_RS06890 (TKY092604_13620) - 1380485..1381711 (-) 1227 WP_000841570.1 L-lactate MFS transporter -
  AABA08_RS06895 (TKY092604_13630) - 1381905..1383221 (+) 1317 WP_000958942.1 FAD-containing oxidoreductase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29742.13 Da        Isoelectric Point: 5.7806

>NTDB_id=95136 AABA08_RS06880 WP_000940838.1 1377675..1378463(-) (codY) [Streptococcus pneumoniae strain PF2]
MAHLVEKTRKITSILKRSEEQLQDELPYNAITRQLADIIHCNACIINSKGRLLGYFMRYKTNTDRVEQFFQTKIFPDDYV
QGANMIYETEANLPVEHDMSIFPVESRDDFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLVLVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGKLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLISDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=95136 AABA08_RS06880 WP_000940838.1 1377675..1378463(-) (codY) [Streptococcus pneumoniae strain PF2]
ATGGCACATTTAGTAGAAAAAACTAGAAAAATTACATCAATTTTGAAACGCTCAGAGGAGCAGTTGCAGGATGAGCTTCC
TTACAACGCTATTACGCGTCAGTTAGCGGATATTATTCATTGCAATGCCTGCATTATCAATAGTAAGGGACGTCTGCTTG
GCTATTTTATGCGTTATAAAACAAATACAGATCGCGTAGAGCAATTCTTCCAAACTAAGATTTTCCCAGATGACTACGTT
CAAGGGGCTAATATGATTTACGAAACAGAAGCAAACTTACCTGTTGAGCATGATATGAGTATTTTCCCTGTTGAGAGTAG
AGATGATTTTCCAGATGGCTTGACGACTATTGCACCGATTCATGTATCGGGGATTCGCCTTGGTTCTTTGATTATTTGGC
GTAATGATAAAAAATTCGAAGATGAGGACTTGGTTCTTGTTGAGATTGCCAGTACCGTTGTTGGGATTCAGCTTCTTAAC
TTCCAACGTGAAGAAGATGAGAAAAATATTCGTCGTCGTACTGCTGTCACCATGGCGGTCAATACCCTTTCTTACTCCGA
ACTCCGTGCTGTTTCAGCAATTTTAGGGGAATTAAATGGAAATGAAGGGAAGTTGACTGCGTCAGTGATTGCAGATCGTA
TCGGAATCACTCGCTCTGTGATTGTCAATGCTCTTCGTAAACTTGAGTCTGCGGGGATTATTGAAAGTCGCTCACTTGGA
ATGAAGGGAACCTATCTTAAGGTCTTGATTTCAGATATTTTTGAAGAAGTGAAGAAAAGAGATTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.214

100

0.622
  codY Bacillus subtilis subsp. subtilis str. 168

47.967

93.893

0.45

Multiple sequence alignment