Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   WHO38_RS08830 Genome accession   NZ_CP148124
Coordinates   1688856..1689635 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis isolate FELIX_MS521     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1683856..1694635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO38_RS08810 trmFO 1684549..1685856 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  WHO38_RS08815 xerC 1685924..1686838 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  WHO38_RS08820 clpQ 1686851..1687396 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  WHO38_RS08825 hslU 1687404..1688816 (+) 1413 WP_256683486.1 HslU--HslV peptidase ATPase subunit -
  WHO38_RS08830 codY 1688856..1689635 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  WHO38_RS08835 flgB 1690015..1690404 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  WHO38_RS08840 flgC 1690404..1690856 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  WHO38_RS08845 fliE 1690867..1691187 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  WHO38_RS08850 fliF 1691233..1692843 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  WHO38_RS08855 fliG 1692856..1693872 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  WHO38_RS08860 fliH 1693865..1694617 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=951308 WHO38_RS08830 WP_003220850.1 1688856..1689635(+) (codY) [Bacillus subtilis isolate FELIX_MS521]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=951308 WHO38_RS08830 WP_003220850.1 1688856..1689635(+) (codY) [Bacillus subtilis isolate FELIX_MS521]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467