Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AABA08_RS04225 Genome accession   NZ_AP028602
Coordinates   836042..837790 (+) Length   582 a.a.
NCBI ID   WP_000828832.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 831042..842790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA08_RS04205 (TKY092604_08270) thrB 832156..833025 (+) 870 WP_000692438.1 homoserine kinase -
  AABA08_RS04210 (TKY092604_08280) - 833101..833253 (+) 153 WP_001835993.1 hypothetical protein -
  AABA08_RS04215 (TKY092604_08290) msrB 833320..834258 (+) 939 WP_000818203.1 peptide-methionine (R)-S-oxide reductase MsrB -
  AABA08_RS04220 (TKY092604_08300) - 834316..836040 (+) 1725 WP_000681712.1 ABC transporter ATP-binding protein -
  AABA08_RS04225 (TKY092604_08310) rcrQ 836042..837790 (+) 1749 WP_000828832.1 ABC transporter ATP-binding protein Regulator
  AABA08_RS04230 (TKY092604_08320) - 838137..839396 (+) 1260 WP_001842205.1 TRZ/ATZ family protein -
  AABA08_RS04235 (TKY092604_08330) - 839437..840390 (-) 954 WP_001155352.1 IS30-like element ISSpn8 family transposase -
  AABA08_RS04240 (TKY092604_08340) rplJ 840892..841392 (+) 501 WP_001287270.1 50S ribosomal protein L10 -
  AABA08_RS04245 (TKY092604_08350) rplL 841468..841836 (+) 369 WP_001196960.1 50S ribosomal protein L7/L12 -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64902.45 Da        Isoelectric Point: 7.3120

>NTDB_id=95107 AABA08_RS04225 WP_000828832.1 836042..837790(+) (rcrQ) [Streptococcus pneumoniae strain PF2]
MKRQTVNQTLKRLAVDLANHPFLLFLAFLGTIAQVGLSIYLPILIGQVIDQVLVAGSSPVFWQIFLQMLLVVIGNTLVQW
ANPLLYNRLIFSYTRDLRERIIHKLHRLPIAFVDRQGSGEMVSRVTTDIEQLAAGLTMIFNQFFIGVLMILVSILAMLQI
HLLMTLLVLLLTPLSMVISRFIAKRSYHLFQKQTETRGIQTQLIEESLSQQTIIQSFNAQTEFIQRLREAHDNYSGYSQS
AIFYSSTVNPSTRFVNALIYALLAGVGAYRIMMGSTLTVGRLVTFLNYVQQYTKPFNDISSVLAELQSALACVERIYGVL
DSPEVAETGKEVLTSDQVKGAISFKHVSFGYHPEKILIKDLSIDIPAGSKIAIVGPTGAGKSTLINLLMRFYPISSGDIL
LDGQSIYDYTRVSLRQQFGMVLQETWLTQGTIHDNIAFGNPEASREQVIAAAKAANADFFIQQLPQGYDTKLENAGESLS
VGQAQLLTIARVFLVIPKILILDEATSSIDTRTEVLVQDAFAKLMKGRTSFIIAHRLSTIQDADLILVLVDGDIVEYGNH
QELMDRKGKYYQMQKAAAFSSE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=95107 AABA08_RS04225 WP_000828832.1 836042..837790(+) (rcrQ) [Streptococcus pneumoniae strain PF2]
ATGAAACGACAAACTGTAAACCAGACGCTCAAACGTTTAGCCGTAGATTTAGCAAACCATCCCTTCCTCCTTTTCCTAGC
CTTTCTAGGAACTATTGCCCAAGTTGGCTTATCAATTTACCTACCTATTCTGATTGGGCAGGTCATTGACCAAGTCCTAG
TGGCTGGTTCATCACCAGTTTTTTGGCAGATTTTTCTCCAGATGCTCTTGGTGGTAATAGGAAATACTCTGGTACAATGG
GCCAATCCTCTCCTCTATAATCGTCTAATCTTCTCTTATACTAGAGATTTGCGAGAGCGAATCATCCATAAGCTCCATCG
TTTACCGATTGCTTTTGTAGATAGGCAAGGTAGTGGAGAGATGGTTAGTCGTGTAACCACGGACATCGAACAGTTGGCAG
CTGGCTTGACCATGATTTTTAACCAATTTTTCATTGGTGTTTTGATGATTTTGGTTAGTATTCTAGCCATGCTCCAAATT
CATCTCCTCATGACTCTCTTAGTCTTGCTGTTGACGCCACTGTCCATGGTGATTTCACGCTTTATTGCCAAGAGATCCTA
TCATCTCTTCCAGAAGCAAACAGAGACGAGGGGAATTCAGACTCAGTTGATTGAAGAATCGCTTAGCCAGCAGACTATAA
TCCAGTCCTTCAATGCTCAAACAGAATTTATCCAAAGATTGCGTGAGGCTCATGACAACTACTCAGGCTATTCTCAGTCA
GCCATCTTTTATTCTTCAACGGTCAATCCTTCGACTCGCTTTGTAAATGCACTCATTTATGCCCTTTTAGCTGGAGTAGG
AGCTTATCGTATCATGATGGGTTCAACCTTGACCGTCGGTCGTTTAGTGACTTTTTTGAACTATGTTCAGCAATACACCA
AGCCCTTTAATGATATTTCTTCAGTGCTAGCTGAGTTGCAAAGTGCTCTGGCTTGCGTAGAGCGTATCTATGGAGTCTTA
GATAGCCCTGAAGTGGCTGAAACAGGTAAGGAAGTCTTGACCAGTGACCAAGTTAAGGGAGCTATTTCCTTTAAACATGT
CTCTTTTGGCTACCATCCTGAAAAAATTTTGATTAAGGACTTGTCTATCGATATTCCAGCTGGTAGTAAGATAGCCATCG
TTGGTCCGACAGGTGCTGGAAAATCAACTCTTATCAATCTCCTTATGCGTTTTTATCCCATTAGCTCGGGAGATATCTTG
CTGGATGGGCAATCCATTTATGATTATACACGAGTATCATTGAGACAGCAGTTTGGTATGGTGCTTCAAGAAACCTGGCT
CACACAAGGGACCATTCATGATAATATTGCCTTTGGCAATCCTGAAGCCAGTCGAGAGCAAGTAATTGCTGCTGCCAAAG
CAGCTAATGCAGACTTTTTCATCCAACAGTTGCCACAGGGATACGATACCAAGTTGGAAAATGCTGGAGAATCTCTCTCT
GTCGGCCAAGCTCAGCTCTTGACCATAGCCCGAGTCTTTCTGGTTATTCCAAAGATTCTTATCTTAGACGAGGCAACTTC
TTCCATTGATACACGGACAGAAGTGCTGGTACAGGATGCCTTTGCAAAACTCATGAAGGGCCGCACAAGCTTCATCATTG
CTCACCGTTTGTCAACCATTCAGGATGCGGATTTAATTCTTGTCTTAGTAGATGGTGATATTGTTGAATATGGTAACCAT
CAAGAACTCATGGATAGAAAGGGTAAGTATTACCAAATGCAAAAAGCTGCGGCTTTTAGTTCTGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(359-507)

ABC transporter transmembrane region (ABC_membrane)

(24-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.61

97.766

0.368

Multiple sequence alignment