Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   WHO69_RS00695 Genome accession   NZ_CP148108
Coordinates   151021..151743 (-) Length   240 a.a.
NCBI ID   WP_024372766.1    Uniprot ID   A0AAN1CUN6
Organism   Vibrio natriegens isolate FELIX_MS472     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 146021..156743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO69_RS00670 - 147199..147690 (+) 492 WP_020335694.1 type II secretion system protein M -
  WHO69_RS00675 - 147692..148453 (+) 762 WP_024372765.1 type II secretion system protein N -
  WHO69_RS00680 cysQ 148738..149565 (-) 828 WP_020335696.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  WHO69_RS00685 nudE 149610..150179 (-) 570 WP_020335697.1 ADP compounds hydrolase NudE -
  WHO69_RS00690 nfuA 150340..150924 (-) 585 WP_014230546.1 Fe-S biogenesis protein NfuA -
  WHO69_RS00695 comF 151021..151743 (-) 723 WP_024372766.1 ComF family protein Machinery gene
  WHO69_RS00700 bioH 151828..152595 (+) 768 WP_024372767.1 pimeloyl-ACP methyl ester esterase BioH -
  WHO69_RS00705 - 152707..153171 (+) 465 WP_020335700.1 hypothetical protein -
  WHO69_RS00710 - 153254..155584 (-) 2331 WP_020335701.1 Tex family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27529.72 Da        Isoelectric Point: 9.2040

>NTDB_id=950665 WHO69_RS00695 WP_024372766.1 151021..151743(-) (comF) [Vibrio natriegens isolate FELIX_MS472]
MLSHHWQNIMRRVLGSQCGLCRLPLKTAQSPNALRWCSHCFQYLNPIRRCQHCGLAMQETERSDTVCGECLAEPPPWQRL
ITLGDYAFPLSREVQRFKDHGESWHVEALTQLLAARISSPATLITSVPLHWRRYLSRGFNQSDVLARHLAAHLHRHFDPK
VFRRIQYANSQRGHTKTQREQNLQGAFTLNKKPIYKHVAIVDDVVTTGSTVRQLCQLLLEVGVESIDIYCICRTPAPTSL

Nucleotide


Download         Length: 723 bp        

>NTDB_id=950665 WHO69_RS00695 WP_024372766.1 151021..151743(-) (comF) [Vibrio natriegens isolate FELIX_MS472]
ATGTTATCTCATCACTGGCAAAACATCATGCGTCGCGTGCTCGGTAGTCAATGTGGTTTGTGCAGGCTGCCACTGAAAAC
AGCACAATCACCGAACGCTCTTCGTTGGTGTAGCCATTGTTTTCAGTATCTTAATCCGATTAGAAGGTGCCAACATTGTG
GTTTGGCTATGCAGGAAACAGAAAGGAGCGACACGGTGTGTGGCGAGTGCTTGGCCGAACCACCGCCCTGGCAGCGACTC
ATCACTCTCGGAGACTATGCGTTTCCTCTGTCACGCGAGGTTCAACGCTTTAAAGATCATGGCGAGAGTTGGCACGTAGA
AGCATTAACGCAATTGCTCGCGGCACGTATTTCTTCTCCAGCGACACTGATTACCAGCGTTCCACTGCACTGGCGACGCT
ATTTATCGCGTGGATTCAATCAAAGTGATGTACTTGCCAGACACTTGGCAGCCCATCTGCATCGCCATTTTGACCCTAAA
GTATTTCGTCGTATCCAATACGCAAACTCTCAGAGAGGCCATACTAAAACCCAACGAGAGCAAAACTTGCAAGGTGCGTT
TACCCTCAATAAAAAGCCGATTTATAAACACGTGGCGATTGTCGATGATGTCGTCACAACGGGCAGTACGGTACGACAAT
TATGCCAATTACTACTTGAAGTTGGTGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTACTTCGCTC
TAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

68.88

100

0.692
  comF Vibrio cholerae strain A1552

51.055

98.75

0.504