Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   WHL98_RS08845 Genome accession   NZ_CP148104
Coordinates   1690975..1691754 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS438     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1685975..1696754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL98_RS08825 trmFO 1686668..1687975 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  WHL98_RS08830 xerC 1688043..1688957 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  WHL98_RS08835 clpQ 1688970..1689515 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  WHL98_RS08840 hslU 1689523..1690935 (+) 1413 WP_256683486.1 HslU--HslV peptidase ATPase subunit -
  WHL98_RS08845 codY 1690975..1691754 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  WHL98_RS08850 flgB 1692134..1692523 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  WHL98_RS08855 flgC 1692523..1692975 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  WHL98_RS08860 fliE 1692986..1693306 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  WHL98_RS08865 fliF 1693352..1694962 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  WHL98_RS08870 fliG 1694975..1695991 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  WHL98_RS08875 fliH 1695984..1696736 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=950595 WHL98_RS08845 WP_003220850.1 1690975..1691754(+) (codY) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=950595 WHL98_RS08845 WP_003220850.1 1690975..1691754(+) (codY) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467