Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   WHL49_RS08705 Genome accession   NZ_CP148103
Coordinates   1670012..1670791 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS361     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1665012..1675791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL49_RS08685 trmFO 1665705..1667012 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  WHL49_RS08690 xerC 1667080..1667994 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  WHL49_RS08695 clpQ 1668007..1668552 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  WHL49_RS08700 hslU 1668560..1669972 (+) 1413 WP_256683486.1 HslU--HslV peptidase ATPase subunit -
  WHL49_RS08705 codY 1670012..1670791 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  WHL49_RS08710 flgB 1671171..1671560 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  WHL49_RS08715 flgC 1671560..1672012 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  WHL49_RS08720 fliE 1672023..1672343 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  WHL49_RS08725 fliF 1672389..1673999 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  WHL49_RS08730 fliG 1674012..1675028 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  WHL49_RS08735 fliH 1675021..1675773 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=950509 WHL49_RS08705 WP_003220850.1 1670012..1670791(+) (codY) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=950509 WHL49_RS08705 WP_003220850.1 1670012..1670791(+) (codY) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467