Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACHGLA_RS06505 Genome accession   NZ_CP171841
Coordinates   1535912..1537264 (-) Length   450 a.a.
NCBI ID   WP_395367258.1    Uniprot ID   -
Organism   Streptomyces sp. YH02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1530912..1542264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGLA_RS06480 (ACHGLA_06480) - 1530968..1531324 (-) 357 WP_395359686.1 DUF6167 family protein -
  ACHGLA_RS06485 (ACHGLA_06485) - 1531331..1531768 (-) 438 WP_318206783.1 DUF948 domain-containing protein -
  ACHGLA_RS06490 (ACHGLA_06490) - 1531927..1534191 (+) 2265 WP_395359687.1 ATP-binding protein -
  ACHGLA_RS06495 (ACHGLA_06495) rpsD 1534241..1534855 (-) 615 WP_024758279.1 30S ribosomal protein S4 -
  ACHGLA_RS06500 (ACHGLA_06500) - 1535212..1535901 (-) 690 WP_395359688.1 HNH endonuclease family protein -
  ACHGLA_RS06505 (ACHGLA_06505) rarA 1535912..1537264 (-) 1353 WP_395367258.1 replication-associated recombination protein A Machinery gene
  ACHGLA_RS06510 (ACHGLA_06510) - 1537317..1537943 (-) 627 WP_318206786.1 vitamin K epoxide reductase family protein -
  ACHGLA_RS06515 (ACHGLA_06515) hisS 1538108..1539370 (-) 1263 WP_395359689.1 histidine--tRNA ligase -
  ACHGLA_RS06520 (ACHGLA_06520) - 1539381..1540097 (-) 717 WP_395359690.1 MBL fold metallo-hydrolase -
  ACHGLA_RS06525 (ACHGLA_06525) - 1540271..1541080 (+) 810 WP_395359691.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 47554.05 Da        Isoelectric Point: 6.2962

>NTDB_id=949265 ACHGLA_RS06505 WP_395367258.1 1535912..1537264(-) (rarA) [Streptomyces sp. YH02]
MEPDLFTAAAEDRQEKDPAGSPLAVRMRPRTLDEVVGQKHLLKPGSPLRRLVGDGDGGPAGASSVILWGPPGIGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIDGARRAVGGYGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SIISPLLSRSLLLTLEPLTDEDLRGLMARALTGERGLGGAVTLPEDAEAHLLRVAGGDARRALTALEAAAGAAIAKGEPE
ITLETVEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPNAL
PIAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATTAIGAALADVRNGLAGSVPPHLRDGHYKGAAKLGHAQGYVY
PHDVPGGIAAQQYAPDTIHGKQYYAPTRYGAEARYADVVERVRARLKGDE

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=949265 ACHGLA_RS06505 WP_395367258.1 1535912..1537264(-) (rarA) [Streptomyces sp. YH02]
GTGGAGCCCGACCTCTTTACCGCAGCAGCCGAAGACCGCCAGGAGAAGGACCCCGCCGGCAGCCCGCTGGCCGTCCGGAT
GCGCCCGCGCACCCTCGACGAGGTGGTGGGGCAGAAGCACCTGCTCAAGCCCGGATCGCCGCTGCGCCGGCTCGTGGGCG
ACGGCGACGGCGGCCCGGCCGGCGCCTCCTCCGTGATCCTCTGGGGCCCGCCCGGCATCGGGAAGACGACCCTGGCGTAC
GTGGTCTCCAAGGCGACCAACAAGCGGTTCGTGGAGCTGTCGGCGATCACCGCGGGCGTCAAGGAGGTCCGCGCCGTCAT
CGACGGAGCCCGGCGCGCGGTCGGCGGCTACGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCTCCAAGG
CCCAGCAGGACTCGCTGCTGCCCGCCGTCGAGAACCGCTGGGTGACGCTCATCGCCGCCACCACCGAGAACCCGTACTTC
TCGATCATCTCCCCGCTCCTCTCCCGCTCCCTGCTCCTCACCCTGGAGCCGCTGACCGACGAGGACCTGCGCGGCCTGAT
GGCCCGGGCGCTCACCGGCGAGCGCGGGCTCGGCGGGGCCGTGACCCTGCCGGAGGACGCCGAGGCCCACCTCCTCCGTG
TCGCCGGCGGCGACGCCCGGCGCGCCCTGACCGCCCTGGAGGCGGCCGCGGGCGCGGCCATCGCCAAGGGCGAGCCGGAG
ATCACCCTGGAGACGGTCGAGGAGACCGTCGACCGCGCGGCCGTGAAGTACGACCGGGACGGCGACCAGCACTACGACGT
GGCCAGCGCGCTCATCAAGTCGATCCGCGGTTCGGACGTGGACGCGGCCCTGCACTACCTGGCCCGGATGATCGAGGCGG
GGGAGGACCCGCGCTTCATCGCTCGGCGCCTCATGATCTCCGCGAGCGAGGACATCGGACTCGCCGATCCGAACGCGCTG
CCGATCGCCGTGGCCGCCGCGCAGGCCGTCGCGATGATCGGCTTCCCCGAGGCGGCGCTCACCCTGAGCCACGCGACGAT
CGCCCTGGCCCTGGCCCCGAAGTCGAACGCGGCGACCACCGCGATCGGCGCCGCCCTGGCGGACGTGCGCAACGGCCTCG
CGGGATCGGTCCCGCCGCATCTGCGCGACGGCCACTACAAGGGCGCGGCCAAGCTCGGCCACGCCCAGGGCTACGTCTAC
CCCCATGACGTCCCGGGCGGCATCGCGGCCCAGCAGTACGCCCCGGACACCATCCACGGCAAGCAGTACTACGCCCCGAC
CCGCTACGGCGCCGAAGCGAGATACGCGGACGTGGTGGAGCGAGTGAGGGCCCGCCTGAAGGGCGACGAGTAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(200-276)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

45.921

95.333

0.438