Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   WFE12_RS08850 Genome accession   NZ_CP147877
Coordinates   1691534..1692313 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1686534..1697313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFE12_RS08830 trmFO 1687227..1688534 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  WFE12_RS08835 xerC 1688602..1689516 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  WFE12_RS08840 clpQ 1689529..1690074 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  WFE12_RS08845 hslU 1690082..1691494 (+) 1413 WP_256683486.1 HslU--HslV peptidase ATPase subunit -
  WFE12_RS08850 codY 1691534..1692313 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  WFE12_RS08855 flgB 1692693..1693082 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  WFE12_RS08860 flgC 1693082..1693534 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  WFE12_RS08865 fliE 1693545..1693865 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  WFE12_RS08870 fliF 1693911..1695521 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  WFE12_RS08875 fliG 1695534..1696550 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  WFE12_RS08880 fliH 1696543..1697295 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=949139 WFE12_RS08850 WP_003220850.1 1691534..1692313(+) (codY) [Bacillus subtilis subsp. subtilis str. 168]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=949139 WFE12_RS08850 WP_003220850.1 1691534..1692313(+) (codY) [Bacillus subtilis subsp. subtilis str. 168]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467