Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACG3JK_RS06390 Genome accession   NZ_CP171738
Coordinates   1279499..1280770 (+) Length   423 a.a.
NCBI ID   WP_004235324.1    Uniprot ID   A0ABN0IPV9
Organism   Streptococcus parauberis strain DB-M23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1274499..1285770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JK_RS06365 (ACG3JK_06365) - 1275350..1275820 (-) 471 WP_003104309.1 DUF3013 family protein -
  ACG3JK_RS10270 - 1275915..1276093 (-) 179 Protein_1241 site-specific integrase -
  ACG3JK_RS06375 (ACG3JK_06375) - 1277204..1278309 (+) 1106 WP_100083757.1 IS3 family transposase -
  ACG3JK_RS06380 (ACG3JK_06380) - 1278678..1278881 (+) 204 WP_003105608.1 cold-shock protein -
  ACG3JK_RS06385 (ACG3JK_06385) - 1279015..1279506 (+) 492 WP_004347042.1 GNAT family N-acetyltransferase -
  ACG3JK_RS06390 (ACG3JK_06390) rarA 1279499..1280770 (+) 1272 WP_004235324.1 replication-associated recombination protein A Machinery gene
  ACG3JK_RS06405 (ACG3JK_06405) - 1281704..1281988 (-) 285 WP_003104963.1 hypothetical protein -
  ACG3JK_RS06410 (ACG3JK_06410) - 1282006..1282839 (-) 834 WP_013794356.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  ACG3JK_RS06415 (ACG3JK_06415) - 1282841..1283692 (-) 852 WP_003104340.1 PTS sugar transporter subunit IIC -
  ACG3JK_RS06420 (ACG3JK_06420) - 1283707..1284201 (-) 495 WP_003103258.1 PTS sugar transporter subunit IIB -
  ACG3JK_RS06425 (ACG3JK_06425) - 1284228..1284668 (-) 441 WP_004347079.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46799.13 Da        Isoelectric Point: 6.4398

>NTDB_id=949042 ACG3JK_RS06390 WP_004235324.1 1279499..1280770(+) (rarA) [Streptococcus parauberis strain DB-M23]
MPDNLALRLRPRTISEVIGQKHLVGEGKIIRRMVDANMLSSMILFGPPGIGKTSIASAIAGTTKYAFRTFNATVDTKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDIKEAVQ
AAISDHERGFEFEVKLDEDALDFITTATNGDLRSAYNSLDLAIMSTHPNKDGSRHVTLDTVENSLQRSYITMDKNGDGHF
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDAALSDLRKSGNLPIPRHLRDGHYSGSKELGNAQDYLYPHAYPEKWVKQQYLPDKIKNKNYFDP
NETGKYERALGANKERIDKLSDN

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=949042 ACG3JK_RS06390 WP_004235324.1 1279499..1280770(+) (rarA) [Streptococcus parauberis strain DB-M23]
ATGCCTGATAATTTAGCCTTACGGTTGCGTCCACGAACGATTTCCGAAGTCATTGGACAAAAGCACCTAGTCGGCGAAGG
CAAAATCATCCGCCGCATGGTTGATGCCAACATGTTATCTTCAATGATTCTCTTTGGACCTCCGGGAATTGGTAAAACCT
CCATAGCCAGTGCCATTGCTGGCACAACTAAGTATGCCTTTCGCACCTTTAATGCGACGGTTGACACCAAAAAACGGCTC
CAAGAAATCGCCGAAGAAGCTAAGTTCTCCGGCGGACTTGTTCTTTTGCTTGATGAAATTCACAGACTAGATAAAACCAA
GCAAGATTTCTTACTACCACTATTGGAAAATGGCAACATTATCATGATTGGGGCCACCACTGAAAATCCATTCTTCTCAG
TCACACCTGCCATCCGCAGCAGGGTTCAAATTTTCGAGCTAGAGCCACTTTCCAATCAAGATATCAAAGAGGCTGTTCAA
GCTGCTATCAGCGATCATGAGCGAGGTTTCGAGTTTGAGGTCAAACTAGACGAGGATGCCTTGGACTTCATCACAACAGC
CACCAATGGCGATTTACGGTCTGCCTATAATTCCTTAGACTTGGCCATTATGTCCACCCATCCTAACAAGGACGGAAGTC
GTCATGTGACGCTGGATACGGTTGAAAATAGCTTGCAGCGAAGCTATATTACCATGGATAAAAATGGGGACGGTCACTTT
GATGTCCTGTCTGCTCTGCAAAAATCGATTCGGGGGTCTGATGTCAACGCCAGCCTCCATTACGCCGCACGTTTAGTTGA
GGCCGGGGACCTACCTTCTTTGGCTCGCCGCTTGACCGTCATCGCTTATGAGGATATCGGCTTGGCCAATCCTGAGGCAC
AAATTCATACCGTCACAGCCCTTGATGCTGCGCAGAAAATCGGCTTCCCAGAAGCACGCATACTGATCGCTAATGTGGTT
ATTGACTTGGCCTTATCACCCAAATCTAATTCGGCCTATGTGGCCATGGATGCTGCACTTAGCGACCTTCGGAAATCAGG
TAACCTGCCAATTCCAAGGCATCTGCGCGATGGCCACTATTCTGGCAGCAAAGAACTTGGCAACGCCCAAGATTACCTCT
ATCCCCATGCCTATCCCGAGAAATGGGTTAAGCAACAATACTTGCCAGATAAGATTAAAAATAAAAACTATTTTGACCCA
AATGAAACTGGTAAGTATGAGAGGGCCCTCGGAGCCAATAAAGAAAGGATTGACAAACTTTCTGACAATTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

58.273

98.582

0.574