Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   WDW95_RS09440 Genome accession   NZ_CP147857
Coordinates   1902642..1903577 (-) Length   311 a.a.
NCBI ID   WP_167372300.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain APC3967     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1897642..1908577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDW95_RS09415 - 1898123..1898566 (+) 444 WP_061775261.1 flavodoxin -
  WDW95_RS09420 - 1898685..1899359 (-) 675 WP_096039557.1 hypothetical protein -
  WDW95_RS09425 frr 1899593..1900150 (-) 558 WP_061774678.1 ribosome recycling factor -
  WDW95_RS09430 pyrH 1900181..1900900 (-) 720 WP_061774677.1 UMP kinase -
  WDW95_RS09435 - 1901140..1902333 (-) 1194 WP_368651516.1 acetate kinase -
  WDW95_RS09440 comYH 1902642..1903577 (-) 936 WP_167372300.1 class I SAM-dependent methyltransferase Machinery gene
  WDW95_RS09445 - 1903739..1904227 (-) 489 WP_061774674.1 GNAT family N-acetyltransferase -
  WDW95_RS09450 murC 1904328..1905662 (-) 1335 WP_138492113.1 UDP-N-acetylmuramate--L-alanine ligase -
  WDW95_RS09455 - 1905931..1906542 (-) 612 WP_278215308.1 hypothetical protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 34665.65 Da        Isoelectric Point: 4.4804

>NTDB_id=949008 WDW95_RS09440 WP_167372300.1 1902642..1903577(-) (comYH) [Lactococcus raffinolactis strain APC3967]
MNMEKIETAFGLLLANVQQLETRLATHFYDALIEQNVSYLGKAVSEDLQQRNEQLRALNLTKQEWQKVYQFALIKGAKDM
HLQANHQLTPDAIGYIINFMIETLSTETNLSILELGSGTGNLAETLLTSMSDKALTYTGFEVDDLMIDLSASIADVMQTS
AQFLQIDAVRPQVIEPVDLLLSDLPVGYYPDDAIAQRSVVGSQSEHTYAHHLLMAQGFKYLKADGYAIFIAPSDLLSSPQ
SDLLKKWLQDYASVAAVITLPEDIVTENHTKAIFVLQKSAQGKAPFVFPLISLTNPEIVQSFMTQFRQNMI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=949008 WDW95_RS09440 WP_167372300.1 1902642..1903577(-) (comYH) [Lactococcus raffinolactis strain APC3967]
ATGAATATGGAAAAAATAGAAACGGCATTTGGCCTATTATTAGCCAACGTTCAGCAACTTGAAACACGCTTGGCAACACA
TTTTTACGATGCCTTGATTGAGCAAAATGTGAGCTATCTCGGTAAAGCTGTATCAGAAGACTTGCAGCAACGCAATGAGC
AGTTGCGTGCGCTCAATTTGACAAAACAAGAGTGGCAAAAGGTCTATCAGTTTGCCTTGATTAAGGGAGCTAAGGACATG
CACCTGCAAGCCAATCATCAGTTAACACCGGATGCAATTGGGTATATCATCAATTTCATGATTGAGACCTTATCTACCGA
AACTAACTTGTCTATTTTGGAATTAGGGTCTGGGACAGGTAATTTAGCCGAGACATTATTGACTAGCATGTCAGATAAAG
CACTAACCTATACTGGCTTTGAAGTTGATGATTTAATGATTGACCTGTCGGCTAGCATTGCCGATGTCATGCAAACTTCA
GCCCAATTTTTGCAGATTGATGCTGTGCGCCCTCAGGTTATCGAACCTGTGGATCTGTTATTGTCAGATTTACCGGTAGG
CTATTATCCAGATGATGCGATTGCGCAACGTTCAGTTGTTGGCAGTCAGAGTGAGCATACCTACGCCCATCACTTGCTGA
TGGCGCAAGGATTCAAATATCTAAAAGCAGATGGTTATGCGATTTTTATTGCACCGAGTGATTTGTTGTCTAGTCCGCAA
TCCGATTTATTAAAAAAATGGTTGCAGGATTATGCCAGCGTCGCTGCTGTGATTACTTTACCAGAAGACATTGTCACTGA
AAATCATACTAAGGCAATCTTTGTTTTACAAAAGTCTGCACAAGGTAAAGCACCCTTTGTTTTTCCTTTGATAAGTCTAA
CCAATCCTGAAATTGTGCAGTCTTTCATGACGCAATTTCGTCAGAATATGATATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.662

100

0.547
  comYH Streptococcus mutans UA159

54.662

100

0.547