Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   WEB80_RS18775 Genome accession   NZ_CP147791
Coordinates   3614977..3615756 (-) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus anthracis strain Sterne-CLR1-12     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3609977..3620756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WEB80_RS18750 (WEB80_18750) uppS 3610724..3611500 (-) 777 WP_000971303.1 isoprenyl transferase -
  WEB80_RS18755 (WEB80_18755) frr 3611586..3612143 (-) 558 WP_000531498.1 ribosome recycling factor -
  WEB80_RS18760 (WEB80_18760) pyrH 3612146..3612868 (-) 723 WP_000042663.1 UMP kinase -
  WEB80_RS18765 (WEB80_18765) tsf 3612935..3613822 (-) 888 WP_001018581.1 translation elongation factor Ts -
  WEB80_RS18770 (WEB80_18770) rpsB 3613926..3614627 (-) 702 WP_000111483.1 30S ribosomal protein S2 -
  WEB80_RS18775 (WEB80_18775) codY 3614977..3615756 (-) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  WEB80_RS18780 (WEB80_18780) hslU 3615834..3617225 (-) 1392 WP_000550088.1 ATP-dependent protease ATPase subunit HslU -
  WEB80_RS18785 (WEB80_18785) hslV 3617248..3617790 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  WEB80_RS18790 (WEB80_18790) xerC 3617833..3618732 (-) 900 WP_001101226.1 tyrosine recombinase XerC -
  WEB80_RS18795 (WEB80_18795) trmFO 3618798..3620102 (-) 1305 WP_003161605.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=948808 WEB80_RS18775 WP_000421288.1 3614977..3615756(-) (codY) [Bacillus anthracis strain Sterne-CLR1-12]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=948808 WEB80_RS18775 WP_000421288.1 3614977..3615756(-) (codY) [Bacillus anthracis strain Sterne-CLR1-12]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459