Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACG3JI_RS07410 Genome accession   NZ_CP171734
Coordinates   1482341..1484050 (-) Length   569 a.a.
NCBI ID   WP_003107775.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M9     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1477341..1489050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JI_RS07385 (ACG3JI_07385) - 1477486..1477929 (-) 444 WP_003107771.1 dUTP diphosphatase -
  ACG3JI_RS07390 (ACG3JI_07390) - 1478088..1478447 (-) 360 WP_004235135.1 YbaN family protein -
  ACG3JI_RS07395 (ACG3JI_07395) - 1478627..1479229 (+) 603 WP_003104239.1 NADPH-dependent FMN reductase -
  ACG3JI_RS07400 (ACG3JI_07400) - 1479248..1480507 (+) 1260 WP_013794469.1 NAD(P)H-dependent oxidoreductase -
  ACG3JI_RS07405 (ACG3JI_07405) - 1480557..1482341 (-) 1785 WP_013794470.1 ABC transporter ATP-binding protein -
  ACG3JI_RS07410 (ACG3JI_07410) rcrP 1482341..1484050 (-) 1710 WP_003107775.1 ABC transporter ATP-binding protein Regulator
  ACG3JI_RS07415 (ACG3JI_07415) rcrR 1484043..1484492 (-) 450 WP_003107776.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  ACG3JI_RS07420 (ACG3JI_07420) - 1484699..1485715 (+) 1017 WP_003107779.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  ACG3JI_RS07425 (ACG3JI_07425) galU 1485737..1486642 (+) 906 WP_003103063.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACG3JI_RS07430 (ACG3JI_07430) - 1486665..1487339 (-) 675 WP_003107780.1 rhomboid family intramembrane serine protease -
  ACG3JI_RS07435 (ACG3JI_07435) - 1487336..1487863 (-) 528 WP_004235118.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 62871.71 Da        Isoelectric Point: 5.6472

>NTDB_id=948665 ACG3JI_RS07410 WP_003107775.1 1482341..1484050(-) (rcrP) [Streptococcus parauberis strain DB-M9]
MLKNAIMRYKWYALGSVLMIIAVVASALLQPHYLKDVLSAVMKNDTDKITEVGQILLIIAGVGLIAGTVNTILAAKIAQG
VSADIREKVFRKIQSFSYANVEEFNAGNLVVRMTNDVNQIQNLVMMIFQVLLRLPILFIGAFIMAVNTLPKLWWVIILMV
VLIAIIMALVMSQMGPRFGKFQTLMDKINRIAKENLRGVRVVKSFVQEREQYAKFKETSNELLDLNMFIGYGFSMMQPAL
MLVSYLAVFVSLLLVSKMVKTDPTVIGSIASFMTYMMQIMFSIIMVGFMGMQASRAFISIGRLKEVLETEPAMTFATEEV
EDLNGDIVFDHVSFSYPNEEDAMLKDISFSIKSGQMVGVVGATGAGKSTLAQLIPRLFDPQEGTITIGGKDLKTLSQQTL
RETVSIVLQKAILFSGTIADNLRQGNLTADLQAMESAARIAQAQEFIDRMDLAYESEVEERGNNFSGGQKQRMSIARGVI
SNPKVLVLDDSTSALDAKSEKLVQEALNKDLKDTTTIIIAQKISSVVKADTILVLDEGKLIGQGTHAELVANNAVYREIY
DTQKGKEED

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=948665 ACG3JI_RS07410 WP_003107775.1 1482341..1484050(-) (rcrP) [Streptococcus parauberis strain DB-M9]
ATGCTTAAAAATGCCATCATGCGTTATAAATGGTATGCCCTAGGTTCTGTCTTAATGATCATAGCAGTTGTAGCAAGTGC
ATTGTTACAACCTCATTATCTGAAAGATGTGCTAAGTGCAGTCATGAAAAATGACACAGATAAAATTACAGAAGTTGGAC
AGATATTATTGATTATTGCAGGAGTTGGTTTAATTGCCGGTACTGTCAATACCATTTTAGCAGCTAAGATAGCTCAAGGT
GTATCAGCTGATATCCGTGAGAAGGTATTTAGAAAAATCCAAAGTTTTTCATATGCTAATGTTGAGGAATTTAATGCTGG
TAATTTAGTTGTTCGTATGACCAACGATGTTAACCAAATCCAAAACTTGGTGATGATGATTTTCCAAGTCTTGCTCCGTT
TACCGATTTTATTTATAGGTGCCTTTATTATGGCGGTTAACACTTTACCAAAACTATGGTGGGTTATTATCCTGATGGTT
GTATTAATTGCTATTATTATGGCCCTTGTTATGAGTCAAATGGGCCCACGTTTTGGGAAGTTCCAAACCTTGATGGATAA
AATTAATCGTATTGCTAAAGAGAATCTACGTGGTGTTCGTGTCGTTAAATCGTTCGTTCAAGAAAGAGAACAATATGCTA
AATTCAAAGAGACATCAAATGAACTATTAGATCTTAATATGTTTATTGGGTACGGTTTTTCAATGATGCAACCAGCTTTA
ATGCTAGTTTCGTATTTAGCTGTTTTTGTATCACTCTTATTAGTTTCCAAGATGGTAAAAACAGATCCAACAGTTATAGG
TAGTATTGCTTCCTTCATGACTTATATGATGCAAATCATGTTTTCAATTATTATGGTTGGATTCATGGGGATGCAAGCTA
GTCGTGCTTTTATTTCAATTGGTCGTCTGAAAGAAGTTTTAGAGACAGAACCTGCAATGACTTTTGCTACTGAAGAAGTT
GAAGATTTAAATGGCGATATTGTTTTTGATCATGTATCTTTCTCATATCCAAATGAAGAAGATGCTATGTTAAAAGATAT
TTCCTTCTCTATTAAATCTGGGCAAATGGTTGGTGTCGTTGGCGCAACAGGTGCCGGAAAATCAACCTTGGCTCAATTAA
TTCCTCGTTTATTTGACCCACAAGAGGGTACAATCACAATTGGTGGTAAAGATTTAAAAACACTCAGCCAACAAACACTC
CGCGAAACAGTTTCAATTGTTTTGCAAAAAGCCATTCTCTTTTCGGGGACTATTGCAGATAACCTTCGCCAAGGAAATTT
AACAGCTGATTTACAAGCTATGGAAAGTGCTGCTAGAATCGCGCAAGCTCAAGAATTTATTGACCGAATGGATTTAGCCT
ACGAAAGTGAAGTTGAAGAACGTGGAAATAATTTCTCTGGTGGTCAGAAACAACGGATGTCCATTGCTCGTGGGGTTATC
AGTAATCCCAAGGTCTTAGTCTTGGACGATTCAACGTCAGCCTTAGATGCTAAGTCAGAGAAACTAGTCCAAGAAGCTTT
AAACAAGGACTTGAAAGATACAACAACAATTATCATTGCACAAAAGATTTCGTCAGTGGTTAAAGCCGATACTATCTTAG
TTTTAGATGAAGGTAAGTTAATTGGTCAAGGAACCCATGCTGAATTAGTAGCAAATAATGCAGTCTACCGTGAAATTTAT
GATACACAGAAAGGTAAGGAGGAAGACTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(344-493)

ABC transporter transmembrane region (ABC_membrane)

(16-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

35.017

100

0.366